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OpenJML is a tool for checking code and specifications of Java programs. We describe our experience building the tool on the foundation of JML, OpenJDK and Eclipse, as well as on many advances in specification-based software verification.…

Software Engineering · Computer Science 2014-04-29 David R. Cok

An early-stage version of simulation package ' ELSES' (Extra-Large-Scale Electronic-Structure calculation) is developed for electronic structure and dynamics of large systems, particularly, nm-scale or 10nm-scale systems (www.elses.jp).…

Materials Science · Physics 2009-06-16 Takeo Hoshi , Takeo Fujiwara

The characterization of exoplanet requires reliable determination of the fundamental parameters of their host stars. Spectral fitting plays an important role in this process. For the majority of stellar parameters matching synthetic spectra…

Solar and Stellar Astrophysics · Physics 2023-03-29 Ansgar Wehrhahn , Nikolai Piskunov , Tanja Ryabchikova

Molecular dynamics simulations of biomolecules have been widely adopted in biomedical studies. As classical point-charge models continue to be used in routine biomolecular applications, there have been growing demands on developing…

Computational Physics · Physics 2020-10-28 Haixin Wei , Ruxi Qi , Junmei Wang , Piotr Cieplak , Yong Duan , Ray Luo

The Exascale Computing Project (ECP) is invested in co-design to assure that key applications are ready for exascale computing. Within ECP, the Co-design Center for Particle Applications (CoPA) is addressing challenges faced by…

We introduce a new method for Estimation of Signal Parameters based on Iterative Rational Approximation (ESPIRA) for sparse exponential sums. Our algorithm uses the AAA algorithm for rational approximation of the discrete Fourier transform…

Numerical Analysis · Mathematics 2022-01-07 Nadiia Derevianko , Gerlind Plonka , Markus Petz

We introduce QuESTlink, pronounced "quest link", an open-source Mathematica package which efficiently emulates quantum computers. By integrating with the Quantum Exact Simulation Toolkit (QuEST), QuESTlink offers a high-level, expressive…

Quantum Physics · Physics 2020-05-05 Tyson Jones , Simon C Benjamin

The use of electron mirrors in aberration correction and surface-sensitive microscopy techniques such as low-energy electron microscopy has been established. However, in this work, by implementing an easy to construct, fully electrostatic…

Computational screening of naturally occurring proteins has the potential to identify efficient catalysts among the hundreds of millions of sequences that remain uncharacterized. Current experimental methods remain time, cost and labor…

Quantitative Methods · Quantitative Biology 2024-02-13 Peter G. Mikhael , Itamar Chinn , Regina Barzilay

SPARKX is an open-source Python package developed to analyze simulation data from heavy-ion collision experiments. By offering a comprehensive suite of tools, SPARKX simplifies data analysis workflows, supports multiple formats such as…

Data Analysis, Statistics and Probability · Physics 2026-02-02 Nils Sass , Hendrik Roch , Niklas Götz , Renata Krupczak , Carl B. Rosenkvist

The Active Matter Evaluation Package (AMEP) is a Python library for analyzing simulation data of particle-based and continuum simulations. It provides a powerful and simple interface for handling large data sets and for calculating and…

The AMIDST Toolbox is a software for scalable probabilistic machine learning with a spe- cial focus on (massive) streaming data. The toolbox supports a flexible modeling language based on probabilistic graphical models with latent variables…

SALMON (Scalable Ab-initio Light-Matter simulator for Optics and Nanoscience, http://salmon-tddft.jp) is a software package for the simulation of electron dynamics and optical properties of molecules, nanostructures, and crystalline solids…

While offering unprecedented resolution of atomic and electronic structure, Scanning Probe Microscopy techniques have found greater challenges in providing reliable electrostatic characterization at the same scale. In this work, we…

ePSproc provides codes for post-processing results from ePolyScat (ePS), a suite of codes for the calculation of quantum scattering problems, developed and released by Luchesse \& co-workers (Gianturco et al. 1994)(Natalense and Lucchese…

Computational Physics · Physics 2016-11-15 Paul Hockett

We extend the recently-developed explicit, energy-conserving particle-in-cell (PIC) scheme of [1] to the relativistic Vlasov-Maxwell system. As in the non-relativistic case, the method is built on an optimization problem that is…

Plasma Physics · Physics 2026-05-19 Lee Ricketson , Jingwei Hu

The Particle-In-Cell (PIC) method is a computational technique widely used in plasma physics to model plasmas at the kinetic level. In this work, we present our effort to prepare the semi-implicit energy-conserving PIC code ECsim for…

This application for learning APPROXIMATION ALGORITHM has been designed in Java which will make user comfortable in learning the very complex subject "NP-Completeness" and the solution to NP-Complete problem using approximation algorithm.

Data Structures and Algorithms · Computer Science 2014-01-13 Chiranjeev Kumar

This paper reports on technical aspects of Plasma Operational Simulation (POPSIM), a research framework for data-driven simulation and control built in the machine learning framework JAX. The objective of the project is to address the…

ESP is an open-source research platform for heterogeneous SoC design. The platform combines a modular tile-based architecture with a variety of application-oriented flows for the design and optimization of accelerators. The ESP architecture…

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