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Related papers: Noise effects in polymer dynamics

200 papers

We study phenomenological scaling theories of the polymer dynamics in random media, employing the existing scaling theories of polymer chains and the percolation statistics. We investigate both the Rouse and the Zimm model for Brownian…

Soft Condensed Matter · Physics 2015-06-24 Bikas K. Chakrabarti , Amit K. Chattopadhyay , Amit Dutta

We use direct and stochastic numerical simulations of the magnetohydrodynamic equations to explore the influence of turbulence on the dynamo threshold. In the spirit of the Kraichnan-Kazantsev model, we model the turbulence by a noise, with…

Noise appears in the brain due to various sources, such as ionic channel fluctuations and synaptic events. They affect the activities of the brain and influence neuron action potentials. Stochastic differential equations have been used to…

Neurons and Cognition · Quantitative Biology 2020-06-01 P R Protachevicz , M S Santos , E G Seifert , E C Gabrick , F S Borges , R R Borges , J Trobia , J D Szezech , K C Iarosz , I L Caldas , C G Antonopoulos , Y Xu , R L Viana , A M Batista

An assumption in micromechanical analysis of polymers is that the constitutive polymeric media is non-porous. Non-porosity of media, however, is merely a simplifying assumption. In this paper, we neglect this assumption and studied polymer…

Soft Condensed Matter · Physics 2018-08-15 Mohammad Tehrani , Mohammad Hossein Moshaei , Mehdi Jafari , Mohammad Khalili

We present a Brownian dynamics theory with full hydrodynamics (Stokesian dynamics) for a Gaussian polymer chain embedded in a liquid membrane which is surrounded by bulk solvent and walls. The mobility tensors are derived in Fourier space…

Soft Condensed Matter · Physics 2011-04-04 Sanoop Ramachandran , Shigeyuki Komura , Kazuhiko Seki , Gerhard Gompper

This study deals with polymer looping, an important process in many chemical and biological systems. We investigate basic questions on the looping dynamics of a polymer under tension using the freely-jointed chain (FJC) model. Previous…

Statistical Mechanics · Physics 2024-10-03 Wout Laeremans , Anne Floor den Ouden , Jef Hooyberghs , Wouter G. Ellenbroek

Stochastic transitions between discrete microscopic states play an important role in many physical and biological systems. Often, these transitions lead to fluctuations on a macroscopic scale. A classic example from neuroscience is the…

Statistical Mechanics · Physics 2024-02-20 Lukas Ramlow , Benjamin Lindner

Theoretical models that describe oscillations in biological systems are often either a limit cycle oscillator, where the deterministic nonlinear dynamics gives sustained periodic oscillations, or a noise-induced oscillator, where a fixed…

Quantitative Methods · Quantitative Biology 2015-01-20 Namiko Mitarai , Uri Alon , Mogens H. Jensen

The coupled dynamics of entangled polymers which span a broad time and length scales govern the unique viscoelastic properties of polymers. To follow chain mobility by numerical simulations from the intermediate Rouse and reptation regimes…

Soft Condensed Matter · Physics 2016-11-03 Gary S. Grest

We show that effective interactions mediated by disorder between two directed polymers can be modelled as the crosscorrelation of noises in the Kardar-Parisi-Zhang (KPZ) equations satisfied by the respective free energies of these polymers.…

Condensed Matter · Physics 2009-10-31 Abhik Basu

The noise of signals or currents consisting from a sequence of pulses, elementary events or moving discrete objects (particles) is analyzed. A simple analytically solvable model is investigated in detail both analytically and numerically.…

adap-org · Physics 2009-10-30 B. Kaulakys , T. Meskauskas

We propose here a stochastic binary element whose transition rate depends on its state at a fixed interval in the past. With this delayed stochastic transition this is one of the simplest dynamical models under the influence of ``noise''…

Statistical Mechanics · Physics 2009-10-31 Toru Ohira , Yuzuru Sato

Biological systems are notoriously noisy. Noise, therefore, also plays an important role in many models of neural impulse generation. Noise is not only introduced for more realistic simulations but also to account for cooperative effects…

Neurons and Cognition · Quantitative Biology 2007-05-23 Martin Tobias Huber , Hans Albert Braun

In this paper we present a general result with an easily checkable condition that ensures a transition from chaotic regime to regular regime in random dynamical systems with additive noise. We show how this result applies to a prototypical…

Dynamical Systems · Mathematics 2022-11-30 Isaia Nisoli

A variational method that allows for replica-symmetry breaking is applied to directed polymers in an (N+1)-dimensional disordered medium. The noise studied here has gaussian correlations, i.e. it is short-ranged. In dimensions N<2, the…

Condensed Matter · Physics 2007-05-23 T. Blum

Although the notion of mechanical noise is expected to play a key role in the non-linear rheology of athermally sheared amorphous systems, its characterization has so far remained elusive. Here, we show using molecular dynamic simulations…

Soft Condensed Matter · Physics 2015-08-27 Francesco Puosi , Julien Olivier , Kirsten Martens

We show that the NLS systems with multiplicative noise, nonlinear damping and nonlocal dispersion exhibit a variety of interesting effects which may be useful for modelling the dynamical behavior of one- and two-dimensional molecular…

Noise-induced phase transitions are common in various complex systems, from physics to biology. In this article, we investigate the emergence of crucial events in noise-induced phase transition processes and their potential significance for…

Data Analysis, Statistics and Probability · Physics 2023-06-28 Jacob D. Baxley , David R. Lambert , Mauro Bologna , Bruce J. West , Paolo Grigolini

Stochastic processes with multiplicative noise have been studied independently in several different contexts over the past decades. We focus on the regime, found for a generic set of control parameters, in which stochastic processes with…

Statistical Mechanics · Physics 2015-06-25 D. Sornette

Noise through its interaction with the nonlinearity of the living systems can give rise to counter-intuitive phenomena. In this paper we shortly review noise induced effects in different ecosystems, in which two populations compete for the…

Populations and Evolution · Quantitative Biology 2016-09-26 D. Valenti , A. Giuffrida , G. Denaro , N. Pizzolato , L. Curcio , B. Spagnolo , S. Mazzola , G. Basilone , A. Bonanno