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Gene covariation networks are commonly used to study biological processes. The inference of gene covariation networks from observational data can be challenging, especially considering the large number of players involved and the small…

Molecular Networks · Quantitative Biology 2019-04-17 Anatoly Yambartsev , Michael Perlin , Yevgeniy Kovchegov , Natalia Shulzhenko , Karina L. Mine , Xiaoxi Dong , Andrey Morgun

We study the extinction of long-lived epidemics on finite complex networks induced by intrinsic noise. Applying analytical techniques to the stochastic Susceptible-Infected-Susceptible model, we predict the distribution of large…

Physics and Society · Physics 2017-05-31 Jason Hindes , Ira B. Schwartz

We study the extreme events taking place on complex networks. The transport on networks is modelled using random walks and we compute the probability for the occurance and recurrence of extreme events on the network. We show that the nodes…

Statistical Mechanics · Physics 2011-05-05 Vimal Kishore , M. S. Santhanam , R. E. Amritkar

In the past two decades, significant advances have been made in understanding the structural and functional properties of biological networks, via graph-theoretic analysis. In general, most graph-theoretic studies are conducted in the…

Physics and Society · Physics 2013-10-21 Michelle Rudolph-Lilith , Lyle E. Muller

We study spatial networks constructed by randomly placing nodes on a manifold and joining two nodes with an edge whenever their distance is less than a certain cutoff. We derive the general expression for the connectivity distribution of…

Disordered Systems and Neural Networks · Physics 2009-11-10 Carl Herrmann , Marc Barthelemy , Paolo Provero

Real-world network datasets are typically obtained in ways that fail to capture all edges. The patterns of missing data are often non-uniform as they reflect biases and other shortcomings of different data collection methods. Nevertheless,…

Dynamical Systems · Mathematics 2025-04-25 Xie He , Amir Ghasemian , Eun Lee , Alice Schwarze , Aaron Clauset , Peter J. Mucha

The topology of the Internet has typically been measured by sampling traceroutes, which are roughly shortest paths from sources to destinations. The resulting measurements have been used to infer that the Internet's degree distribution is…

Disordered Systems and Neural Networks · Physics 2013-05-29 Aaron Clauset , Cristopher Moore

Across the sciences, the statistical analysis of networks is central to the production of knowledge on relational phenomena. Because of their ability to model the structural generation of networks, exponential random graph models are a…

Data Analysis, Statistics and Probability · Physics 2015-05-27 Bruce A. Desmarais , Skyler J. Cranmer

The objective of this paper is to study the characteristics (geometric and otherwise) of very large attribute based undirected networks. Real-world networks are often very large and fast evolving. Their analysis and understanding present a…

Applications · Statistics 2015-10-06 Koushiki Sarkar , Diganta Mukherjee

Previous work in network analysis has focused on modeling the mixed-memberships of node roles in the graph, but not the roles of edges. We introduce the edge role discovery problem and present a generalizable framework for learning and…

Machine Learning · Statistics 2016-11-09 Nesreen K. Ahmed , Ryan A. Rossi , Theodore L. Willke , Rong Zhou

A bridge in a graph is an edge whose removal disconnects the graph and increases the number of connected components. We calculate the fraction of bridges in a wide range of real-world networks and their randomized counterparts. We find that…

Physics and Society · Physics 2018-01-24 Ang-Kun Wu , Liang Tian , Yang-Yu Liu

The exponential family of random graphs represents an important and challenging class of network models. Despite their flexibility, conventionally used exponential random graphs have one shortcoming. They cannot directly model weighted…

Probability · Mathematics 2016-07-15 Mei Yin

Complex networks can be understood as graphs whose connectivity deviates from those of regular or near-regular graphs, which are understood as being `simple'. While a great deal of the attention so far dedicated to complex networks has been…

Data Analysis, Statistics and Probability · Physics 2008-08-29 Luciano da Fontoura Costa , Francisco A. Rodrigues

We consider the problem of link prediction in networks whose edge structure may vary (sufficiently slowly) over time. This problem, with applications in many important areas including social networks, has two main variants: the first, known…

Optimization and Control · Mathematics 2020-04-30 Daniele Alpago , Mattia Zorzi , Augusto Ferrante

We develop a new sampling method to estimate eigenvector centrality on incomplete networks. Our goal is to estimate this global centrality measure having at disposal a limited amount of data. This is the case in many real-world scenarios…

Social and Information Networks · Computer Science 2020-10-29 Nicolò Ruggeri , Caterina De Bacco

Most network data are collected from partially observable networks with both missing nodes and missing edges, for example, due to limited resources and privacy settings specified by users on social media. Thus, it stands to reason that…

Social and Information Networks · Computer Science 2020-10-21 Cong Tran , Won-Yong Shin , Andreas Spitz , Michael Gertz

We study the network dismantling problem, which consists in determining a minimal set of vertices whose removal leaves the network broken into connected components of sub-extensive size. For a large class of random graphs, this problem is…

Physics and Society · Physics 2016-11-16 Alfredo Braunstein , Luca Dall'Asta , Guilhem Semerjian , Lenka Zdeborová

Network embedding, which aims to learn low-dimensional representations of nodes, has been used for various graph related tasks including visualization, link prediction and node classification. Most existing embedding methods rely solely on…

Social and Information Networks · Computer Science 2019-08-22 Palash Goyal , Homa Hosseinmardi , Emilio Ferrara , Aram Galstyan

In this paper, we propose an evolving network model growing fast in units of module, based on the analysis of the evolution characteristics in real complex networks. Each module is a small-world network containing several interconnected…

Physics and Society · Physics 2011-10-11 Zou Zhi-Yun , Liu Peng , Lei Li , Gao Jian-Zhi

Small-world networks are ubiquitous in real-life systems. Most previous models of small-world networks are stochastic. The randomness makes it more difficult to gain a visual understanding on how do different nodes of networks interact with…

Statistical Mechanics · Physics 2007-05-23 Zhongzhi Zhang , Lili Rong , Chonghui Guo
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