English
Related papers

Related papers: DNA Bubble Life Time in Denaturation

200 papers

The manuscript by Berezhiani (arXiv:1812.11089) proposes a model that has the neutron decaying into a mirror neutron with a branching fraction of 1%, alleviating the tension between neutron lifetime measurements in beam vs bottle…

High Energy Physics - Phenomenology · Physics 2019-02-26 Bartosz Fornal , Benjamin Grinstein

We investigate the persistence probability of a Brownian particle in a harmonic potential, which decays to zero at long times -- leading to an unbounded motion of the Brownian particle. We consider two functional forms for the decay of the…

Statistical Mechanics · Physics 2012-07-26 D. Chakraborty

We report a study of DNA (150 bp fragments) conformations in very low added salt $<0.05$mM, across wide DNA concentration range $0.0015\leq c \leq 8$~mM (bp). We found an intermediate DNA conformation in the region $0.05 < c < 1$~mM, by…

We report results of molecular dynamics simulations of a binary Lennard-Jones system at zero pressure in the undercooled liquid and glassy states. We first follow the evolution of diffusivity and dynamic heterogeneity with temperature and…

Disordered Systems and Neural Networks · Physics 2007-05-23 H. R. Schober

We numerically study the wetting (adsorption) transition of a polymer chain on a disordered substrate in 1+1 dimension.Following the Poland-Scheraga model of DNA denaturation, we use a Fixman-Freire scheme for the entropy of loops. This…

Disordered Systems and Neural Networks · Physics 2007-05-23 Thomas Garel , Cecile Monthus

A theory for thermomechanical behavior of homogeneous DNA at thermal equilibrium predicts critical temperatures for denaturation under torque and stretch, phase diagrams for stable B--DNA, supercoiling, optimally stable torque, and the…

Soft Condensed Matter · Physics 2015-05-27 Cristiano Nisoli , A. R. Bishop

Motivated by the desire to understand complex transient behaviour in fluid flows, we study the dynamics of an air bubble driven by the steady motion of a suspending viscous fluid within a Hele-Shaw channel with a centred depth perturbation.…

Water electrolysis in a microsystem is observed and analyzed on a short-time scale ~10 us. Very unusual properties of the process are stressed. An extremely high current density is observed because the process is not limited by the…

Soft Condensed Matter · Physics 2013-07-18 Vitaly B. Svetovoy , Remco G. P. Sanders , Miko C. Elwenspoek

We derive new constraints on the neutron lifetime based on the recent Planck 2015 observations of temperature and polarization anisotropies of the CMB. Under the assumption of standard Big Bang Nucleosynthesis, we show that Planck data…

Cosmology and Nongalactic Astrophysics · Physics 2016-04-05 Laura Salvati , Luca Pagano , Rosa Consiglio , Alessandro Melchiorri

It is widely believed that heterogeneous nucleation occurs without an activation process when the surface is completely wettable. In this report, we review our previous work [J.Chem.Phys {\bf 134}, 234709 (2011)] to show that the critical…

Materials Science · Physics 2013-07-04 Masao Iwamatsu

The quantum "Zeno" time of the 2P-1S transition of the hydrogen atom is computed and found to be approximately 3.59 10^{-15}s (the lifetime is approximately 1.595 10^{-9}s). The temporal behavior of this system is analyzed in a purely…

Quantum Physics · Physics 2009-10-31 P. Facchi , S. Pascazio

The neutron beta-decay lifetime plays an important role both in understanding weak interactions within the framework of the Standard Model and in theoretical predictions of the primordial abundance of 4He in Big Bang Nucleosynthesis. In…

It has been recently shown that nanobubbles exhibit a remarkable and unexpected stability. The lifetime of nanobubbles, formed either within liquids or on hydrophobic surfaces, can exceed by more than 10 orders of magnitude the theoretical…

Soft Condensed Matter · Physics 2019-05-14 Caroline Desgranges , Jerome Delhommelle

The neutron, besides its $\beta$-decay $n\to p e\bar\nu_e$, might have a new decay channel $n\to n' X$ into mirror neutron $n'$, its nearly mass degenerate twin from parallel dark sector, and a massless boson $X$ which can be ordinary and…

High Energy Physics - Phenomenology · Physics 2020-02-27 Zurab Berezhiani

We study the parameter sensitivity of hetero-polymeric DNA within the purview of DNA breathing dynamics. The degree of correlation between the mean bubble size and the model parameters are estimated for this purpose for three different DNA…

Biomolecules · Quantitative Biology 2014-03-27 Srijeeta Talukder , Shrabani Sen , Prantik Chakraborti , Ralf Metzler , Suman K Banik , Pinaki Chaudhury

The dynamics of loops at the DNA denaturation transition is studied. A scaling argument is used to evaluate the asymptotic behavior of the autocorrelation function of the state of complementary bases (either open or closed). The long-time…

Statistical Mechanics · Physics 2008-07-03 Amir Bar , Yariv Kafri , David Mukamel

The paper uses mesoscopic, non-linear lattice dynamics based (Peyrard-Bishop-Dauxois, PBD) modeling to describe thermal properties of DNA below and near the denaturation temperature. Computationally efficient notation is introduced for the…

Statistical Mechanics · Physics 2015-03-18 Nikos Theodorakopoulos

We investigated how the finiteness of the length of the sequence affects the phase transition that takes place at DNA melting temperature. For this purpose, we modified the Transfer Integral method to adapt it to the calculation of both…

Biological Physics · Physics 2011-11-10 Sahin Buyukdagli , Marc Joyeux

We present a theoretical model for the experimentally found but counter-intuitive exceptionally long lifetime of surface nanobubbles. We can explain why, under normal experimental conditions, surface nanobubbles are stable for many hours or…

Fluid Dynamics · Physics 2015-06-11 Joost H. Weijs , Detlef Lohse

When illuminated by a laser, nano particles immersed in water can very quickly and strongly heat up, leading to the nucleation of so called vapor bubbles, which have huge application potential in e.g. solar light-harvesting, catalysis, and…