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A growing number of proteins have been shown to adopt knotted folds. Yet the biological roles and biophysical properties of these knots remain poorly understood. We have used protein engineering and atomic force microscopy to explore…

Biological Physics · Physics 2009-11-13 T. Bornschloegl , D. M. Anstrom , E. Mey , J. Dzubiella , M. Rief , K. T. Forest

The growth of confined magnetic films with ferromagnetic interactions between nearest-neighbor spins is studied in a stripped $(1+1)-$dimensional rectangular geometry. Magnetic films are grown irreversibly by adding spins at the boundaries…

Statistical Mechanics · Physics 2007-05-23 Julián Candia , Ezequiel V. Albano

We study the dynamics of ordering in ferromagnets via Monte Carlo simulations of the Ising model, employing the Glauber spin-flip mechanism, in space dimensions $d=2$ and $3$. Results for the persistence probability and the domain growth…

Statistical Mechanics · Physics 2015-01-22 Saikat Chakraborty , Subir K. Das

Protein folding processes are generally described statistically with the help of multidimensional free energy landscape, typically reduced to a 1-D free energy profile along good reaction co-ordinate. There are many physical parameters…

Biological Physics · Physics 2017-05-04 Debajyoti De , Anurag Singh , Amar Nath Gupta

We investigated the evolution of ferromagnetism in layered Fe$_3$GeTe$_2$ flakes under different pressures and temperatures using in situ magnetic circular dichroism (MCD) spectroscopy. We found that the rectangle shape of hysteretic loop…

Mesoscale and Nanoscale Physics · Physics 2020-05-08 Heshen Wang , Runzhang Xu , Cai Liu , Le Wang , Zhan Zhang , Huimin Su , Shanmin Wang , Yusheng Zhao , Zhaojun Liu , Dapeng Yu , Jia-Wei Mei , Xiaolong Zou , Jun-Feng Dai

We consider the behavior of an Ising ferromagnet obeying the Glauber dynamics under the influence of a fast switching, random external field. In Part I, we introduced a general formalism for describing such systems and presented the mean…

Statistical Mechanics · Physics 2009-10-31 J. Hausmann , P. Rujan

We computationally study the spontaneous phase separation of ternary fluid mixtures using the lattice Boltzmann method, both when all the surface tensions are equal and when they have different values. Previous theoretical works typically…

Soft Condensed Matter · Physics 2022-08-01 Alvin C. M. Shek , Halim Kusumaatmaja

The statistics of randomly branching double-folded ring polymers are relevant to the secondary structure of RNA, the large-scale branching of plectonemic DNA (and thus bacterial chromosomes), the conformations of single-ring polymers…

Soft Condensed Matter · Physics 2025-10-03 Elham Ghobadpour , Max Kolb , Ivan Junier , Ralf Everaers

On the basis of the pseudopotential plane-wave(PP-PW) method in combination with the local-density-functional theory(LDFT), complete stress-strain curves for the uniaxial loading and uniaxial deformation along the [001] and [111]…

Materials Science · Physics 2009-10-31 Weixue Li , Tzuchiang Wang

Analytical treatments, formulated to predict the rate of the bainite transformation, define autocatalysis as the growth of the subunits at the bainite-austenite interface. Furthermore, the role of the stress-free transformation strain is…

Materials Science · Physics 2020-02-24 Ephraim Schoof , Prince Gideon Kubendran Amos , Daniel Schneider , Britta Nestler

We study the effect of general nonlinear force laws in viscoelastic lattice models of fracture, focusing on the existence and stability of steady-state Mode III cracks. We show that the hysteretic behavior at small driving is very sensitive…

Materials Science · Physics 2009-10-31 David A. Kessler , Herbert Levine

We have used kinetic Monte Carlo simulations to study the kinetics of unfolding of cross-linked polymer chains under mechanical loading. As the ends of a chain are pulled apart, the force transmitted by each crosslink increases until it…

Biological Physics · Physics 2009-11-10 Kilho Eom , Dmitrii E Makarov , Gregory J. Rodin

The complex phase diagram of manganites with simultaneously active spin, charge, orbital, and lattice degrees of freedom continues providing surprises. In a recent groundbreaking experiment, membranes of the perovskite manganite…

Strongly Correlated Electrons · Physics 2020-07-22 Cengiz Şen , Elbio R. Dagotto

Multi-orbital Hubbard model Hamiltonians for the undoped parent compounds of the Fe-pnictide superconductors are here investigated using mean-field techniques. For a realistic four-orbital model, our results show the existence of an…

Superconductivity · Physics 2009-11-13 Rong Yu , Kien T. Trinh , Adriana Moreo , Maria Daghofer , José A. Riera , Stephan Haas , Elbio Dagotto

Nanochannels provide means for detailed experiments on the effect of confinement on biomacromolecules, such as DNA. We here introduce a model for the complete unfolding of DNA from the circular to linear configuration. Two main ingredients…

We consider a lattice model of itinerant electrons coupled to an array of localized classical Heisenberg spins. The nature of the ground state ordered magnetic phases that result from the indirect spin-spin coupling mediated by the…

Strongly Correlated Electrons · Physics 2017-05-25 Wenjian Hu , Richard T. Scalettar , Rajiv R. P. Singh

Multicomponent lipid mixtures exhibit complex phase behavior, including coexistence of nanoscopic fluid phases in ternary mixtures mimicking the composition of the outer leaflet of mammalian plasma membrane. The physical mechanisms…

Soft Condensed Matter · Physics 2011-06-01 Frederick A. Heberle , Gerald W. Feigenson

Depinning and nonequilibrium transitions within sliding states in systems driven over quenched disorder arise across a wide spectrum of size scales ranging from atomic friction at the nanoscale, flux motion in type-II superconductors at the…

Soft Condensed Matter · Physics 2017-03-22 Cs. Sándor , A. Libál , C. Reichhardt , C. J. Olson Reichhardt

Among the multiple steps constituting the kinesin's mechanochemical cycle, one of the most interesting events is observed when kinesins move an 8-nm step from one microtubule (MT)-binding site to another. The stepping motion that occurs…

Soft Condensed Matter · Physics 2009-11-13 Changbong Hyeon , José N. Onuchic

A ferromagnetic insulating (FM-I) state in Pr0.75Ca0.25MnO3 has been studied by neutron scattering experiment and theoretical calculation. The insulating behavior is robust against an external magnetic field, and is ascribed to neither the…

Strongly Correlated Electrons · Physics 2009-11-10 R. Kajimoto , H. Mochizuki , H. Yoshizawa , S. Okamoto , S. Ishihara
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