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We report a high energy-resolution neutron backscattering study, combined with in-situ diffraction, to investigate slow molecular motions on nanosecond time scales in the fluid phase of phospholipid bilayers of…

Biological Physics · Physics 2009-10-02 Maikel C. Rheinstadter , Jhuma Das , Elijah J. Flenner , Beate Bruening , Tilo Seydel , Ioan Kosztin

Combining extensive molecular dynamics simulations of lipid bilayer systems of varying chemical composition with single-trajectory analyses we systematically elucidate the stochastic nature of the lipid motion. We observe subdiffusion over…

Soft Condensed Matter · Physics 2015-06-11 Jae-Hyung Jeon , Hector Martinez-Seara Monne , Matti Javanainen , Ralf Metzler

The presence and the properties of lipid bilayer nanometer-scale domains might be important for understanding the membranes of living cells. We used molecular dynamics (MD) simulations to investigate perturbations of a small patch of…

Soft Condensed Matter · Physics 2011-06-01 Frederick A. Heberle , David G. Ackerman , Gerald W. Feigenson

We employ 100 ns molecular dynamics simulations to study the influence of cholesterol on structural and dynamic properties of dipalmitoylphosphatidylcholine (DPPC) bilayers in the fluid phase. The effects of the cholesterol content on the…

Soft Condensed Matter · Physics 2009-11-10 Emma Falck , Michael Patra , Mikko Karttunen , Marja T. Hyvonen , Ilpo Vattulainen

We report diffusion coeffcients of micron-scale liquid domains in giant unilamellar vesicles of phospholipids and cholesterol. The trajectory of each domain is tracked, and the mean square displacement grows linearly in time as expected for…

Soft Condensed Matter · Physics 2007-05-23 Pietro Cicuta , Sarah L. Keller , Sarah L. Veatch

Lipid membranes in a physiological context cannot be understood without taking into account their mobile environment. Here, we report on a high energy-resolution neutron backscattering study to investigate slow motions on nanosecond time…

Biological Physics · Physics 2007-05-23 Maikel C. Rheinstädter , Tilo Seydel , Tim Salditt

The cell membrane is inherently asymmetric and heterogeneous in its composition, a feature that is crucial for its function. Using atomistic molecular dynamics simulations, the physical properties of a 3-component asymmetric mixed lipid…

Soft Condensed Matter · Physics 2012-04-04 Anirban Polley , Satyavani Vemparala , Madan Rao

Amphiphilic lipid bilayers modify the friction properties of the surfaces on top of which they are deposited. In particular, the measured sliding friction coefficient is significantly reduced compared with the native surface. We investigate…

Biological Physics · Physics 2021-12-01 Othmène Benazieb , Claire Loison , Fabrice Thalmann

We investigate with computer simulations the critical radius of pores in a lipid bilayer membrane. Ilton et al. (2016) recently showed that nucleated pores in a homopolymer film can increase or decrease in size, depending on whether they…

Soft Condensed Matter · Physics 2017-10-26 Clark Bowman , Mark Chaplain , Anastasios Matzavinos

Lipid structures exhibit complex and highly dynamic lateral structure; and changes in lipid density and fluidity are believed to play an essential role in membrane targeting and function. The dynamic structure of liquids on the molecular…

Soft Condensed Matter · Physics 2016-12-21 Neda Dadashvand , Christina M. Othon

The excimer formation dynamics of pyrene-labeled molecules in lipid bilayers depends on molecular motion over distances of the order of 1-2 nm. From the concentration dependence of the excimer photoemission curve, it is possible to derive a…

Soft Condensed Matter · Physics 2022-04-12 Pierre Ayoub , Fabrice Thalmann

We report a high energy-resolution neutron backscattering study to investigate slow motions on nanosecond time scales in highly oriented solid supported phospholipid bilayers of the model system DMPC -d54 (deuterated…

Soft Condensed Matter · Physics 2007-05-23 Maikel C. Rheinstädter , Tilo Seydel , Franz Demmel , Tim Salditt

We report on atomistic simulations of DPPC lipid monolayers using the CHARMM36 lipid force field and four-point OPC water model. The entire two-phase region where domains of the `liquid-condensed' (LC) phase coexist with domains of the…

Soft Condensed Matter · Physics 2019-03-18 S. Panzuela , D. P. Tieleman , L. Mederos , E. Velasco

With the aim of establishing a criterion for identifying when a lipid bilayer has reached steady state using the molecular dynamics simulation technique, lipid bilayers of different composition in their liquid crystalline phase were…

Soft Condensed Matter · Physics 2012-12-13 Rodolfo D. Porasso , José J. López Cascales

We summarize and compare recent Molecular Dynamics simulations on the interactions of dipalmitoylphosphatidylcholine (DPPC) bilayers in the liquid crystalline phase with a number of small molecules including trehalose, a disaccharide of…

Biological Physics · Physics 2007-05-23 Bryan W. Lee , Roland Faller , Amadeu K. Sum , Ilpo Vattulainen , Michael Patra , Mikko Karttunen

Coarse-grained model for saturated (DCPC, DLPC, DMPC, DPPC, DSPC) and unsaturated (POPC, DOPC) phospholipids is introduced within the Single Chain Mean Field theory. A single set of parameters adjusted for DMPC bilayers gives an adequate…

Soft Condensed Matter · Physics 2014-05-19 Yachong Guo , Sergey Pogodin , Vladimir A. Baulin

The equilibrium distance between two lipid bilayers stable in bulk water and in proximity of a substrate was investigated. Samples consisted of a homogeneous lipid bilayer, floating near an identical bilayer deposited on the hydrophilic…

Soft Condensed Matter · Physics 2007-05-23 Giovanna Fragneto , Thierry Charitat , Edith Bellet-Amalric , Robert Cubitt , Francois Graner

Diffusion at solid-liquid interfaces is crucial in many technological and biophysical processes. Although its behavior seems deceivingly simple, recent studies showing passive superdiffusive transport suggest diffusion on surfaces may hide…

Statistical Mechanics · Physics 2016-05-25 Diego Krapf , Grace Campagnola , Kanti Nepal , Olve B. Peersen

We report a high energy-resolution neutron backscattering study to investigate slow motions on nanosecond time scales in highly oriented solid supported phospholipid bilayers of the model system DMPC -d54 (deuterated…

Soft Condensed Matter · Physics 2007-05-23 Maikel C. Rheinstädter , Tilo Seydel , Tim Salditt

A molecular model is proposed of a bilayer consisting of fully saturated DPPC and mono unsaturated DOPC. The model not only encompasses the constant density within the hydrophobic core of the bilayer, but also the tendency of chain segments…

Biological Physics · Physics 2009-11-10 R. Elliott , K. Katsov , M. Schick , I. Szleifer
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