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Recently we developed a diagonal homotopy method to compute a numerical representation of all positive dimensional components in the intersection of two irreducible algebraic sets. In this paper, we rewrite this diagonal homotopy in…
We describe a general purpose algorithm for counting simple cycles and simple paths of any length $\ell$ on a (weighted di)graph on $N$ vertices and $M$ edges, achieving a time complexity of $O\left(N+M+\big(\ell^\omega+\ell\Delta\big)…
Recombining trinomial trees are a workhorse for modeling discrete-event systems in option pricing, logistics, and feedback control. Because each node stores a state-dependent quantity, a depth-$D$ tree naively yields $\mathcal{O}(3^{D})$…
We consider the problem of augmenting an $n$-vertex tree with one shortcut in order to minimize the diameter of the resulting graph. The tree is embedded in an unknown space and we have access to an oracle that, when queried on a pair of…
A connected set in a graph is a non-empty set of vertices that induces a connected subgraph. In an infinite lattice, a connected set is often referred to as a lattice animal, whose enumeration up to isomorphism is a classical problem in…
The Constraint Shortest Path (CSP) problem is as follows. An $n$-vertex graph is given, each edge/arc assigned two weights. Let us call them "cost" and "length" for definiteness. Finding a min-cost upper-bounded length path between a given…
Drift analysis is a powerful tool for analyzing the time complexity of evolutionary algorithms. However, it requires manual construction of drift functions to bound hitting time for each specific algorithm and problem. To address this…
Given a graph, the general problem to cover the maximum number of vertices by a collection of vertex-disjoint long paths seemingly escapes from the literature. A path containing at least $k$ vertices is considered long. When $k \le 3$, the…
Recent work of the author connected several parking function enumeration problems to enumerations of Catalan paths with respect to certain weight functions that are expressed in terms of the ascent lengths. Motivated by this, we generalise…
Consider a finite directed graph without cycles in which the arrows are weighted. We present an algorithm for the computation of a new distance, called path-length-weighted distance, which has proven useful for graph analysis in the context…
We show that the shadow vertex algorithm can be used to compute a short path between a given pair of vertices of a polytope P = {x : Ax \leq b} along the edges of P, where A \in R^{m \times n} is a real-valued matrix. Both, the length of…
Graphlet analysis is an approach to network analysis that is particularly popular in bioinformatics. We show how to set up a system of linear equations that relate the orbit counts and can be used in an algorithm that is significantly…
Given a weighted digraph D, finding the longest simple path is well known to be NP-hard. Furthermore, even giving an approximation algorithm is known to be NP-hard. In this paper we describe an efficient heuristic algorithm for finding long…
We present a linear programming based algorithm for computing a spanning tree $T$ of a set $P$ of $n$ points in $\Re^d$, such that its crossing number is $O(\min(t \log n, n^{1-1/d}))$, where $t$ the minimum crossing number of any spanning…
In this paper we present the first deterministic polynomial time algorithm for determining the existence of a Hamiltonian cycle and finding a Hamiltonian cycle in general graphs. Our algorithm can also solve the Hamiltonian path problem in…
We introduce Loop Ranking, a new ranking measure based on the detection of closed paths, which can be computed in an efficient way. We analyze it with respect to several ranking measures which have been proposed in the past, and are widely…
Betweenness centrality---measuring how many shortest paths pass through a vertex---is one of the most important network analysis concepts for assessing the relative importance of a vertex. The well-known algorithm of Brandes [J. Math.…
We present two new and efficient algorithms for computing all-pairs shortest paths. The algorithms operate on directed graphs with real (possibly negative) weights. They make use of directed path consistency along a vertex ordering d. Both…
Given a pattern $p = s_1x_1s_2x_2\cdots s_{r-1}x_{r-1}s_r$ such that $x_1,x_2,\ldots,x_{r-1}\in\{x,\overset{{}_{\leftarrow}}{x}\}$, where $x$ is a variable and $\overset{{}_{\leftarrow}}{x}$ its reversal, and $s_1,s_2,\ldots,s_r$ are…
Given in the plane a set $S$ of $n$ points and a set of disks centered at these points, the disk graph $G(S)$ induced by these disks has vertex set $S$ and an edge between two vertices if their disks intersect. Note that the disks may have…