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The influence of the salts KCl, NaCl, and NaI at molar concentrations on the {\alpha}-helical folding kinetics of the alanine-based oligopeptide Ace-AEAAAKEAAAKA-Nme is investigated by means of (explicit-water) molecular dynamics…

Soft Condensed Matter · Physics 2010-12-08 Yann von Hansen , Immanuel Kalcher , Joachim Dzubiella

Gold nanoparticles (AuNPs) play an important role in fundamental research and development due to their versatile applications and biocompatibility. This study addresses the aging of three AuNP suspensions after the addition of various…

Soft Condensed Matter · Physics 2025-02-04 Philipp Ritzert , Alexandra Striegel , Regine von Klitzing

We investigate the formation/re-dissociation mechanisms of hybrid complexes made from negatively charged PAA2k coated {\gamma}-Fe2O3 nanoparticles (NP) and positively charged polycations (PDADMAC) in aqueous solution in the regime of very…

Soft Condensed Matter · Physics 2021-09-21 Sumit Mehan , Laure Herrmann , Jean-Paul Chapel , Jacques Jestin , Jean-Francois Berret , Fabrice Cousin

Recent advancement in quantitative liquid-jet photoelectron spectroscopy enables the accurate determination of the absolute-scale electronic energetics of liquids and species in solution. Our major objective is the determination of the…

The microhydration of rock salt (NaCl) molecules was investigated using high-resolution Penning ionization electron spectroscopy (PIES) in helium nanodroplets. Although model calculations predict that NaCl molecules are fully submerged…

Using molecular dynamics simulations, the structure of model mini-protein was thoroughly characterized in the imidazolium-based amino acid ionic liquids and their aqueous solutions. We report that the mini-protein is more stable when AAIL…

Biological Physics · Physics 2015-05-28 Guillaume Chevrot , Eudes Eterno Fileti , Vitaly V. Chaban

In contrast to the well-known destabilization of globular proteins by high pressure, re- cent work has shown that pressure stabilizes the formation of isolated {\alpha}-helices. However all simulations to date have obtained a qualitatively…

Soft Condensed Matter · Physics 2015-03-13 Robert B. Best , Cayla Miller , Jeetain Mittal

Urea denatures proteins due to its strong tendency to dehydrate the first solvation shell via urea-residue preferential binding. However, even after extensive experimental and computational investigations, the influence of urea on the…

Soft Condensed Matter · Physics 2022-12-05 Luis A. Baptista , Yani Zhao , Kurt Kremer , Debashish Mukherji , Robinson Cortes-Huerto

We have performed multicanonical Monte Carlo simulations of C-peptide of ribonuclease A. It is known by CD and NMR experiments that this peptide has high alpha-helix content in aqueous solution and that the side-chain charges of residues…

Chemical Physics · Physics 2007-05-23 Ulrich H. E. Hansmann , Yuko Okamoto

This study investigates the interfacial tension, fluid mobility, and crystallization behavior of various saline and additive-modified solutions in a microfluidic chip environment, simulating pore-scale processes during CO2 injection. The…

Sodium chloride (NaCl), or rocksalt, is well characterized at ambient pressure. Due to the large electronegativity difference between Na and Cl atoms, it has highly ionic chemical bonding, with stoichiometry 1:1 dictated by charge balance,…

We derive structural and binding energy trends for twenty amino acids, their dipeptides, and their interactions with the divalent cations Ca$^{2+}$, Ba$^{2+}$, Sr$^{2+}$, Cd$^{2+}$, Pb$^{2+}$, and Hg$^{2+}$. The underlying data set consists…

Biomolecules · Quantitative Biology 2016-09-15 Matti Ropo , Volker Blum , Carsten Baldauf

Understanding the stabilities of proteins in nanopores requires a quantitative description of confinement induced interactions between amino acid side chains. We use molecular dynamics simulations to study the nature of interactions between…

Chemical Physics · Physics 2015-06-23 S. Vaitheeswaran , D. Thirumalai

At ambient pressure, sodium, chlorine, and their only known compound NaCl, have well-understood crystal structures and chemical bonding. Sodium is a nearly-free-electron metal with the bcc structure. Chlorine is a molecular crystal,…

Ion specificity and related Hofmeister effects, ubiquitous in aqueous systems, can have spectacular consequences in hydrated clays, where ion-specific nanoscale surface forces can determine large scale cohesive, swelling and shrinkage…

Soft Condensed Matter · Physics 2022-12-02 Francis Dragulet , Abhay Goyal , Katerina Ioannidou , Roland J. -M. Pellenq , Emanuela Del Gado

The solvation process of an alkali ion (Na$^+$, K$^+$, Rb$^+$, Cs$^+$) inside a superfluid $^4$He$_{2000}$ nanodroplet is investigated theoretically using liquid $^4$He time-dependent density functional theory at zero temperature. We…

Atomic and Molecular Clusters · Physics 2025-07-22 Ernesto García-Alfonso , Manuel Barranco , Martí Pi , Nadine Halberstadt

Here we report the polarization dependent non-resonant second harmonic generation (SHG) measurement of the interfacial water molecules at the aqueous solution of the following salts: NaF, NaCl, NaBr, KF, KCl, and KBr. Through quantitative…

Chemical Physics · Physics 2016-08-29 Hong-tao Bian , Ran-ran Feng , Yuan Guo , Hong-fei Wang

Urea at sufficiently high concentration unfolds the secondary structure of proteins leading to denaturation. In contrast, Choline Chloride (ChCl) and urea, in 1:2 molar ratio form a deep eutectic mixture, a liquid at room temperature and…

Soft Condensed Matter · Physics 2019-09-17 Atanu Maity , Soham Sarkar , Ligesh Theeyancheri , Rajarshi Chakrabarti

Alkali halide (100) surfaces are anomalously poorly wetted by their own melt at the triple point. We carried out simulations for NaCl(100) within a simple (BMHFT) model potential. Calculations of the solid-vapor, solid-liquid and…

Materials Science · Physics 2007-05-23 T. Zykova-Timan , D. Ceresoli , U. Tartaglino , E. Tosatti

Analogous to the aqueous solution where the pH of the solvent affects its multiple behaviors, the Lewis acidity-basicity of molten salts also greatly influences their thermophysical and thermochemical properties. In the study, we develop…

Materials Science · Physics 2024-06-21 Changzu Zhu , Jia Song , Xiaorui Xu , Chengyu Wang , Yang Tong , Lve Lin , Shaoqiang Guo , Wentao Zhou , Adrien Couet , Yafei Wang
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