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When organisms adapt to spatially heterogeneous environments, selection may drive divergence at multiple genes. If populations under divergent selection also exchange migrants, we expect genetic differentiation to be high at selected loci,…

Populations and Evolution · Quantitative Biology 2014-07-21 Simon Aeschbacher , Reinhard Buerger

We performed a stability analysis of 119 quantitative food webs which were compiled using a standard methodology to build Ecopath mass-balance models. Our analysis reveals that classic descriptors of complexity do not affect stability in…

Populations and Evolution · Quantitative Biology 2013-07-23 Claire Jacquet , Charlotte Moritz , Lyne Morissette , Pierre Legagneux , François Massol , Phillippe Archambault , Dominique Gravel

Food webs -- networks of predators and prey -- have long been known to exhibit "intervality": species can generally be ordered along a single axis in such a way that the prey of any given predator tend to lie on unbroken compact intervals.…

Populations and Evolution · Quantitative Biology 2016-06-29 Virginia Domínguez-García , Samuel Johnson , Miguel A. Muñoz

Real food web data available in the literature presents us with the relations between various species, sizes of these species, metabolic types of the species and other useful information, which allows us to define parameters for the…

Populations and Evolution · Quantitative Biology 2016-10-25 Alexander Pimenov

Ecological systems are emergent features of ecological and adaptive dynamics of a community of interacting species. By natural selection through the abiotic environment and by co-adaptation within the community, species evolve, thereby…

Populations and Evolution · Quantitative Biology 2018-07-03 Katharina Brinck , Henrik Jeldtoft Jensen

Within food webs, species can be partitioned into groups according to various criteria. Two notions have received particular attention: trophic groups, which have been used for decades in the ecological literature, and more recently,…

Populations and Evolution · Quantitative Biology 2015-04-14 Benoit Gauzens , Elisa Thébault , Gérard Lacroix , Stéphane Legendre

In nature, most microbial populations have complex spatial structures that can affect their evolution. Evolutionary graph theory predicts that some spatial structures modelled by placing individuals on the nodes of a graph affect the…

Populations and Evolution · Quantitative Biology 2024-12-30 Alia Abbara , Lisa Pagani , Celia García-Pareja , Anne-Florence Bitbol

Evolutionary models measure the probability of amino acid substitutions occurring over different evolutionary distances. We examine various evolutionary models based on empirically derived amino acid substitution matrices. The models are…

Populations and Evolution · Quantitative Biology 2007-05-23 B. Barbiellini , Alexandra Portnova , Anna Chetoukhina , Chia-Hsin Lu , Matteo Pellegrini

In models for the evolution of predation from initially purely competitive species interactions, the propensity of predation is most often assumed to be a direct consequence of the relative morphological and physiological traits of…

Populations and Evolution · Quantitative Biology 2023-07-11 Yaroslav Ispolatov , Carlos Doebeli , Michael Doebeli

Food webs are complex ecological networks whose structure is both ecologically and statistically constrained, with many network properties being correlated with each other. Despite the recognition of these invariable relationships in food…

Quantitative Methods · Quantitative Biology 2023-01-18 Francis Banville , Dominique Gravel , Timothée Poisot

Dispersal is a well recognized driver of ecological and evolutionary dynamics, and simultaneously an evolving trait. Dispersal evolution has traditionally been studied in single-species metapopulations so that it remains unclear how…

The expansion of a population into new habitat is a transient process that leaves its footprints in the genetic composition of the expanding population. How the structure of the environment shapes the population front and the evolutionary…

Populations and Evolution · Quantitative Biology 2018-11-26 Daniel A. Beller , Kim M. J. Alards , Francesca Tesser , Ricardo A. Mosna , Federico Toschi , Wolfram Möbius

The cascade model generates a food web at random. In it the species are labeled from 0 to $m$, and arcs are given at random between pairs of the species. For an arc with endpoints $i$ and $j$ ($i<j$), the species $i$ is eaten by the species…

Cellular Automata and Lattice Gases · Physics 2011-06-24 Yoshiaki Itoh

Bedau has developed a general set of evolutionary statistics that quantify the adaptive component of evolutionary processes. On the basis of these measures, he has proposed a set of 4 classes of evolutionary system. All artificial life…

Adaptation and Self-Organizing Systems · Physics 2009-09-29 Russell K. Standish

Food and nutrition occupy an increasingly prevalent space on the web, and dishes and recipes shared online provide an invaluable mirror into culinary cultures and attitudes around the world. More specifically, ingredients, flavors, and…

The concentration of the population in coastal regions, in addition to the direct human use, is leading to an accelerated process of change and deterioration of the marine ecosystems. Human activities such as fishing together with…

This is the first of two papers where we discuss the limits imposed by competition to the biodiversity of species communities. In this first paper we study the coexistence of competing species at the fixed point of population dynamic…

Populations and Evolution · Quantitative Biology 2007-05-23 Ugo Bastolla , Michael Lässig , Susanna C. Manrubia , Angelo Valleriani

We present a mathematical analysis of the speciation model for food-web structure, which had in previous work been shown to yield a good description of empirical data of food-web topology. The degree distributions of the network are…

Populations and Evolution · Quantitative Biology 2007-05-23 A. G. Rossberg , H. Matsuda , T. Amemiya , K. Itoh

We investigate how perturbations propagate up and down a food chain with and without self-interaction and omnivory. A source of perturbation is a shift in death rate of a trophic level, and the measure of perturbation is the difference…

Populations and Evolution · Quantitative Biology 2017-02-07 Iaroslav Ispolatov , Michael Doebeli

Ecosystems are commonly organized into trophic levels -- organisms that occupy the same level in a food chain (e.g., plants, herbivores, carnivores). A fundamental question in theoretical ecology is how the interplay between trophic…

Populations and Evolution · Quantitative Biology 2023-03-07 Zhijie Feng , Robert Marsland , Jason W. Rocks , Pankaj Mehta