Related papers: Exact Calculations of Membrane Areas with Simple M…
An exact quantization of the spherical membrane moving in flat target spacetime backgrounds is performed. Crucial ingredients are the exact integrabilty of the $3D~SU(\infty)$ continuous Toda equation and the quasi-finite highest weight…
The use of excessively long timesteps in dissipative particle dynamics simulations may produce simulation artifacts due to the generation of configurations which are not representative of the desired canonical ensemble. The configurational…
Monte Carlo simulations have been performed to analyze the sub-diffusion dynamics of a tagged monomer in self-avoiding polymerized membranes in the flat phase. By decomposing the mean square displacement into the out-of-plane ($\parallel$)…
Active contributions to fluctuations are a direct consequence of metabolic energy consumption in living cells. Such metabolic processes continuously create active forces, which deform the membrane to control motility, proliferation as well…
We investigate pores in fluid membranes by molecular dynamics simulations of an amphiphile-solvent mixture, using a molecular coarse-grained model. The amphiphilic membranes self-assemble into a lamellar stack of amphiphilic bilayers…
Given a smooth simply connected planar domain, the area is bounded away from zero in terms of the maximal curvature alone. We show that in higher dimensions this is not true, and for a given maximal mean curvature we provide smooth…
The fluctuations of two-dimensional extended objects membranes is a rich and exciting field with many solid results and a wide range of open issues. We review the distinct universality classes of membranes, determined by the local order,…
This chapter summarizes several approaches combining theory, simulation and experiment that aim for a better understanding of phenomena in lipid bilayers and membrane protein systems, covering topics such as lipid rafts, membrane mediated…
We study the tiling of a two-dimensional region of the plane by $K$-cell one-dimensional tiles, or $K$-mers. Unlike previous studies, which typically allowed for one single value of $K$ or sometimes a small assortment of fixed values, here…
A theoretical calculation is presented to describe the confined motion of transmembrane molecules in cell membranes. The study is analytic, based on Master equations for the probability of the molecules moving as random walkers, and leads…
The phase structure of self-avoiding polymerized membranes is studied by extensive Hybrid Monte Carlo simulations. Several folding transitions from the flat to a collapsed state are found. Using a suitable order parameter and finite size…
Numerical simulations of turbulent Rayleigh-B\'enard convection in an ideal gas, using either the anelastic approximation or the fully compressible equations, are compared. Theoretically, the anelastic approximation is expected to hold in…
Motivated by the formal argument that a non-zero shear modulus is the result of averaging over a constrained configurations space, we demonstrate that the shear modulus calculated over a range of temperatures and averaging times can be…
Understanding how different classes of molecules move across biological membranes is a prerequisite to predicting a solute's permeation rate, which is a critical factor in the fields of drug design and pharmacology. We use biased Molecular…
The simulation of open molecular systems requires explicit or implicit reservoirs of energy and particles. Whereas full atomistic resolution is desired in the region of interest, there is some freedom in the implementation of the…
We discuss thermal and active fluctuations of a compressible bilayer vesicle by using the results of hydrodynamic theory for vesicles. Coupled Langevin equations for the membrane deformation and the density fields are employed to calculate…
Spherical symmetry is ubiquitous in nature. It's therefore unfortunate that spherical system simulations are so hard, and require complete spheres with millions of interacting particles. Here we introduce an approach to model spherical…
We present a geometrical canonical description for superconducting membranes. We consider a general action which includes a general class of superconducting extended objects (strings and domain walls). The description is inspired in the ADM…
We present a mathematical model of polymer bilayers that undergo large bending deformations when actuated by non-mechanical stimuli such as thermal effects. The simple model captures a large class of nonlinear bending effects and can be…
We derived free energy functional of a bilayer lipid membrane from the first principles of elasticity theory. The model explicitly includes position-dependent mutual slide of monolayers and bending deformation. Our free energy functional of…