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Nested structure, which is non-random, controls cooperation dynamics and biodiversity in plant-animal mutualistic networks. This structural pattern has been explained in a static (non-growth) network models. However, evolutionary processes…

Populations and Evolution · Quantitative Biology 2015-03-19 Kazuhiro Takemoto , Masanori Arita

We provide a rigorous solution to the problem of constructing a structural evolution for a network of coupled identical dynamical units that switches between specified topologies without constraints on their structure. The evolution of the…

Physics and Society · Physics 2016-01-20 Charo I. del Genio , Miguel Romance , Regino Criado , Stefano Boccaletti

We use a generalised version of the individual-based Tangled Nature model of evolutionary ecology to study the relationship between ecosystem structure and evolutionary history. Our evolved model ecosystems typically exhibit interaction…

Populations and Evolution · Quantitative Biology 2007-05-23 Simon Laird , Henrik Jeldtoft Jensen

We explore the interplay between the topological relevance of a neuron and its dynamical traces in experimental cultured neuronal networks. We monitor the growth and development of these networks to characterise the evolution of their…

Adaptation and Self-Organizing Systems · Physics 2023-07-14 A. Tlaie , L. M. Ballesteros-Esteban , I. Leyva , I. Sendina-Nadal

To understand the formation, evolution, and function of complex systems, it is crucial to understand the internal organization of their interaction networks. Partly due to the impossibility of visualizing large complex networks, resolving…

Physics and Society · Physics 2011-11-30 Takashi Nishikawa , Adilson E. Motter

As individuals communicate, their exchanges form a dynamic network. We demonstrate, using time series analysis of communication in three online settings, that network structure alone can be highly revealing of the diversity and novelty of…

Social and Information Networks · Computer Science 2012-05-23 Chun-Yuen Teng , Liuling Gong , Avishay Livne , Celso Brunetti , Lada A. Adamic

Investigating relation between various structural patterns found in real-world networks and stability of underlying systems is crucial to understand importance and evolutionary origin of such patterns. We evolve multiplex networks,…

Adaptation and Self-Organizing Systems · Physics 2017-02-22 Sanjiv K. Dwivedi , Sarika Jalan

The network of interactions in complex systems, strongly influences their resilience, the system capability to resist to external perturbations or structural damages and to promptly recover thereafter. The phenomenon manifests itself in…

Physics and Society · Physics 2018-04-11 Malbor Asllani , Timoteo Carletti

We present the distance matrix evolution for different types of networks: exponential, scale-free and classical random ones. Statistical properties of these matrices are discussed as well as topological features of the networks. Numerical…

Statistical Mechanics · Physics 2007-05-23 K. Malarz , K. Kulakowski

Many functions have been recently defined to assess the similarity among networks as tools for quantitative comparison. They stem from very different frameworks - and they are tuned for dealing with different situations. Here we show an…

Molecular Networks · Quantitative Biology 2012-08-21 Giuseppe Jurman , Roberto Visintainer , Cesare Furlanello

This article defines a partial order structure to study the relationship between levels and contents of conscious subjective experience in a single mathematical set-up. We understand phenomenal structure as extrapolated relationships among…

Neurons and Cognition · Quantitative Biology 2025-02-05 J. Díaz-Boils , N. Tsuchiya , CM. Signorelli

Although it is unambiguously agreed that structure plays a fundamental role in shaping the dynamics of complex systems, this intricate relationship still remains unclear. We investigate a general computational transformation by which we can…

Disordered Systems and Neural Networks · Physics 2015-05-13 Jie Zhang , Changsong Zhou , Xiaoke Xu , Michael Small

The study of causal structure in complex systems has gained increasing attention, with many recent studies exploring causal networks that capture cause-effect relationships across diverse fields. Despite increasing empirical evidence…

Physics and Society · Physics 2025-02-26 Jiazhen Liu , Kunal Tamang , Dashun Wang , Chaoming Song

Accurately determining and classifying the structure of complex networks is the focus of much current research. One class of network of particular interest are metabolic pathways, which have previously been studied from a graph theoretical…

Mathematical Physics · Physics 2012-10-10 Henry Dorrian , Kieran Smallbone , Jon borresen

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

Neurons and Cognition · Quantitative Biology 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

Many real-world complex systems including human interactions can be represented by temporal (or evolving) networks, where links activate or deactivate over time. Characterizing temporal networks is crucial to compare such systems and to…

Physics and Society · Physics 2022-08-30 Alberto Ceria , Shlomo Havlin , Alan Hanjalic , Huijuan Wang

We study the evolution of networks when the creation and decay of links are based on the position of nodes in the network measured by their centrality. We show that the same network dynamics arises under various centrality measures, and…

Physics and Society · Physics 2013-05-29 Michael D. Koenig , Claudio J. Tessone

Networks form the backbone of many complex systems, ranging from the Internet to human societies. Accordingly, not only is the range of our interactions limited and thus best described and modeled by networks, it is also a fact that the…

Physics and Society · Physics 2015-05-15 Zhen Wang , Lin Wang , Attila Szolnoki , Matjaz Perc

Species interaction networks are a powerful tool for describing ecological communities; they typically contain nodes representing species, and edges representing interactions between those species. For the purposes of drawing abstract…

Machine Learning · Computer Science 2025-02-25 Sanaz Hasanzadeh Fard , Emily Dolson

Biological networks have evolved to be highly functional within uncertain environments while remaining extremely adaptable. One of the main contributors to the robustness and evolvability of biological networks is believed to be their…

Molecular Networks · Quantitative Biology 2008-02-14 Arend Hintze , Christoph Adami
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