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We consider a model ecosystem of sessile species competing for space. In particular, we consider the system introduced in [Mathiesen et al. Phys. Rev. Lett. 107, 188101 (2011)] where species compete according to a fixed interaction network…

Populations and Evolution · Quantitative Biology 2017-03-22 Florian Uekermann , Joachim Mathiesen , Namiko Mitarai

Simulation of population dynamics is a central research theme in computational biology, which contributes to understanding the interactions between predators and preys. Conventional mathematical tools of this theme, however, are incapable…

Multiagent Systems · Computer Science 2020-02-11 Jun Yamada , John Shawe-Taylor , Zafeirios Fountas

Phase transitions in equilibrium and nonequilibrium systems play a major role in the natural sciences. In dynamical networks, phase transitions organize qualitative changes in the collective behavior of coupled dynamical units. Adaptive…

Adaptation and Self-Organizing Systems · Physics 2023-02-22 Jan Fialkowski , Serhiy Yanchuk , Igor M. Sokolov , Eckehard Schöll , Georg A. Gottwald , Rico Berner

Non-transitive dominance and the resulting cyclic loop of three or more competing species provide a fundamental mechanism to explain biodiversity in biological and ecological systems. Both Lotka-Volterra and May-Leonard type model…

Populations and Evolution · Quantitative Biology 2020-10-20 D. Bazeia , B. F. de Oliveira , J. V. O. Silva , A. Szolnoki

There are various examples of phenotypic plasticity in ecosystems that serve as the basis for a wide range of inducible defences against predation. These strategies include camouflage, burrowing, mimicry, evasive actions, and even…

Populations and Evolution · Quantitative Biology 2025-01-06 Sangeeta Saha , Swadesh Pal , Roderick Melnik

We review recent results on lattice models for spin-less fermions with strong repulsive interactions. A judicious tuning of kinetic and interaction terms leads to a model possessing supersymmetry. In the 1D case, this model displays…

Mathematical Physics · Physics 2017-08-23 L. Huijse , K. Schoutens

Computer simulations of minimal population-dynamics models have long been used to explore questions in ecosystems coexistence and species biodiversity, via simple agent-based models of three interacting species, referred to as $R$, $P$, and…

Populations and Evolution · Quantitative Biology 2024-10-07 Dave Cliff

We study the two-species symbiotic contact process (2SCP), recently proposed in [de Oliveira, Santos and Dickman, Phys. Rev. E {\bf 86}, 011121 (2012)] . In this model, each site of a lattice may be vacant or host single individuals of…

Populations and Evolution · Quantitative Biology 2015-06-22 Marcelo M. de Oliveira , Ronald Dickman

In this letter we consider a single parameter generalization of the standard three species Rock-Paper-Scissors (RPS) model allowing for predator-prey reversal. This model, which shall be referred to as $\kappa$RPS model, incorporates…

Populations and Evolution · Quantitative Biology 2023-05-31 P. P. Avelino , B. F. de Oliveira , R. S. Trintin

Chase-Escape is a simple stochastic model that describes a predator-prey interaction. In this model, there are two types of particles, red and blue. Red particles colonize adjacent empty sites at an exponential rate $\lambda_{R}$, whereas…

Disordered Systems and Neural Networks · Physics 2018-07-24 Si Tang , George Kordzakhia , Steven P. Lalley

Evolutionary game theory is one of the key paradigms behind many scientific disciplines from science to engineering. In complex networks, because of the difficulty of formulating the replicator dynamics, most of previous studies are…

Physics and Society · Physics 2014-05-06 Yichao Zhang , M. A. Aziz-Alaoui , Cyrille Bertelle , Shi Zhou , Wenting Wang

We present simulation results for the contact process on regular, cubic networks that are composed of a one-dimensional lattice and a set of long edges with unbounded length. Networks with different sets of long edges are considered, that…

Statistical Mechanics · Physics 2015-05-13 R. Juhász , G. Ódor

We develop a mathematical model of extinction and coexistence in a generic predator-prey ecosystem composed of two herbivores in asymmetrical competition and a hunter exerting a predatory pressure on both species. With the aim of…

Adaptation and Self-Organizing Systems · Physics 2017-08-28 Marcelo N Kuperman , Fabiana Laguna , Guillermo Abramson , Adrian Monjeau. Jose Luis Lanata

In a predator-prey metapopulation, the two traits are adversely related: synchronization and persistence. A decrease in synchrony apparently leads to an increase in persistence and, therefore, necessitates the study of desynchrony in a…

Populations and Evolution · Quantitative Biology 2023-10-19 Palash Kumar Pal , Md Sayeed Anwar , Dibakar Ghosh

A lattice of interacting Majorana modes can occur in a superconducting film on a topological insulator in a magnetic field. The phase diagram as a function of interaction strength for the square lattice was analyzed recently using a…

Strongly Correlated Electrons · Physics 2018-12-19 Kyle Wamer , Ian Affleck

We study the phase transition from the persistence phase to the extinction phase for the SIRS (susceptible/ infected/ refractory/ susceptible) model of diseases spreading on small world network. We show the effects of all the parameters…

Physics and Society · Physics 2019-11-19 Mohammed Ali Saif

We introduce a model for a population on a lattice with diffusion and birth/death according to 2A->3A and A->0 for a particle A. We find that the model displays a phase transition from an active to an absorbing state which is continuous in…

Statistical Mechanics · Physics 2015-06-25 Alastair Windus , Henrik Jeldtoft Jensen

An evolutionary prisoner's dilemma (PD) game is studied with players located on a hierarchical structure of layered square lattices. The players can follow two strategies [D (defector) and C (cooperator)] and their income comes from PD…

Statistical Mechanics · Physics 2009-11-10 Jeromos Vukov , Gyorgy Szabo

We study the contact process on layered networks in which each layer is unidirectionally coupled to the next layer. Each layer has elements sitting on i) Erd{\"o}s-R{\'e}yni network, ii) a $d$-dimensional lattice. The layer at the top which…

Statistical Mechanics · Physics 2022-07-20 Manoj C. Warambhe , Ankosh D. Deshmukh , Prashant M. Gade

Systems composed of distinct complex networks are present in many real-world environments, from society to ecological systems. In the present paper, we propose a network model obtained as a consequence of interactions between two species…

Biological Physics · Physics 2007-08-08 Luis Enrique Correa da Rocha , Luciano da Fontoura Costa