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Drug resistance and metastasis - the major complications in cancer - both entail adaptation of cancer cells to stress, whether a drug or a lethal new environment. Intriguingly, these adaptive processes share similar features that cannot be…

Molecular Networks · Quantitative Biology 2021-09-28 Aseel Shomar , Omri Barak , Naama Brenner

Virtually every biological rate depends on temperature, yet the resulting rate-temperature relationships often deviate strongly from simple Arrhenius behavior. In this first part of a two-part review, we survey phenomenological models used…

Quantitative Methods · Quantitative Biology 2026-03-11 Simen Jacobs , Julian Voits , Nikita Frolov , Ulrich S. Schwarz , Lendert Gelens

Time pressure and question difficulty can trigger stress and cognitive overload in web-based surveys, compromising data quality and user experience. Most stress detection methods are based on low-resolution self-reports, which are poorly…

Human-Computer Interaction · Computer Science 2026-01-27 Ailin Liu , Francesco Chiossi , Felix Henninger , Lisa Bondo Andersen , Tobias Wistuba , Sonja Greven , Frauke Kreuter , Fiona Draxler

This paper reviews the molecular theory of hydrophobic effects relevant to biomolecular structure and assembly in aqueous solution. Recent progress has resulted in simple, validated molecular statistical thermodynamic theories and…

Chemical Physics · Physics 2015-06-26 Lawrence R. Pratt

Molecular dynamic simulation enables one to correlate the evolution of the micro-structure with anisotropic stress when a material is subject to strain. The anisotropic stress due to a constant strain-rate load in a cross-linked polymer is…

Soft Condensed Matter · Physics 2011-05-05 Prashant Kumar Srivastava , Kartik Venkatraman

The oxygen stoichiometry is an essential key to tune functional properties of advanced oxide materials and thus has motivated numerous studies of the oxygen off-stoichiometry diagram, with the aim to determine and control structural,…

Industrial polymeric materials often rely on antioxidants to achieve long-term reliability. Previous studies have frequently discussed the stabilization effect in the presence of macroscopic additive migration. However, the micro- to…

Soft Condensed Matter · Physics 2026-02-17 Takato Ishida , Emmanuel Richaud

The mechanical response of static, unconfined, overcompressed face centred cubic, granular arrays is studied using large-scale, discrete element method simulations. Specifically, the stress response due to the application of a localised…

Soft Condensed Matter · Physics 2015-06-24 Abdullah Cakir , Leonardo E. Silbert

In this work we study, at the single molecular level, the thermodynamic and dynamic characteristics of an enzymatic reaction comprising a rate limiting step. We investigate how the stability of the enzyme-state stationary probability…

Subcellular Processes · Quantitative Biology 2015-05-20 Moisés Santillán

Many aspects of the study of protein folding and dynamics have been affected by the recent advances in machine learning. Methods for the prediction of protein structures from their sequences are now heavily based on machine learning tools.…

Biological Physics · Physics 2019-11-25 Frank Noé , Gianni De Fabritiis , Cecilia Clementi

Reaction-diffusion processes are the foundational model for a diverse range of complex systems, ranging from biochemical reactions to social agent-based phenomena. The underlying dynamics of these systems occur at the individual…

Statistical Mechanics · Physics 2025-10-15 Mauricio J. del Razo , Margarita Kostré

Various psychological factors affect how individuals express emotions. Yet, when we collect data intended for use in building emotion recognition systems, we often try to do so by creating paradigms that are designed just with a focus on…

Machine Learning · Computer Science 2019-08-27 Mimansa Jaiswal , Zakaria Aldeneh , Emily Mower Provost

Thermodynamics could be seen as an expression of physics at a high epistemic level. As such, its potential as an inductive bias to help machine learning procedures attain accurate and credible predictions has been recently realized in many…

Machine Learning · Computer Science 2023-05-29 Elias Cueto , Francisco Chinesta

This paper gives details of a tentative modeling study that investigates the inhibiting effect of internal reactor walls treated with acid...

Cells and tissues change shape both to carry out their function and during pathology. In most cases, these deformations are driven from within the systems themselves. This is permitted by a range of molecular actors, such as active…

Biological Physics · Physics 2022-10-18 Alexander Erlich , Jocelyn Étienne , Jonathan Fouchard , Tom Wyatt

Biological forces govern essential cellular and molecular processes in all living organisms. Many cellular forces, e.g. those generated in cyclic conformational changes of biological machines, have repetitive components. However, little is…

Biomolecules · Quantitative Biology 2008-09-17 P. Szymczak , Harald Janovjak

The forces between charged macromolecules, usually given in terms of osmotic pressure, are highly affected by the intervening ionic solution. While in most theoretical studies the solution is treated as a homogeneous structureless…

Soft Condensed Matter · Physics 2014-04-22 Dan Ben-Yaakov , David Andelman , Daniel Harries , Rudi Podgornik

Enzymes are on the front lines of evolution. All living organisms rely on highly efficient, specific enzymes for growth, sustenance, and reproduction; and many diseases are a consequence of a mutation on an enzyme that affects its catalytic…

Molecular Networks · Quantitative Biology 2009-01-07 Nilou Ataie

This review mainly focuses on the relation between antioxidants with cancer therapy. Antioxidants have been reported to play an essential role to reduce free radical species. Free radicals commonly cause oxidative damage which is a common…

Tissues and Organs · Quantitative Biology 2020-03-11 Qurat-ul-Ain , M. Iqbal Choudhary

We investigate the stress response function of a layer of grains, i.e. the stress profile in response to a localized overload. The shape of the profile is very sensitive to the packing arrangement, and is thus a good signature of the…

Soft Condensed Matter · Physics 2007-05-23 A. P. F. Atman , P. Claudin
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