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We perform Brownian dynamics simulations of active stiff polymers undergoing run-reverse dynamics, and so mimic bacterial swimming, in porous media. In accord with recent experiments of \emph{Escherichia coli}, the polymer dynamics are…

For the KPZ equation on a torus with a $1+1$ spacetime white noise, it was shown in \cite{GK21,ADYGTK22} that the height function satisfies a central limit theorem, and the variance can be written as the expectation of an exponential…

Probability · Mathematics 2024-06-24 Yu Gu , Tomasz Komorowski

The movement of a particle described by Brownian motion is quantified by a single parameter, $D$, the diffusion constant. The estimation of $D$ from a discrete sequence of noisy observations is a fundamental problem in biological single…

Subcellular Processes · Quantitative Biology 2016-04-13 Peter K. Relich , Mark J. Olah , Patrick J. Cutler , Keith A. Lidke

We study the Brownian motion of a rigid rod threading through a small fixed ring while the ring can freely rotate. We derive the distribution function for the sliding displacement and the unit vector along the rod both at equilibrium and…

Soft Condensed Matter · Physics 2026-04-02 Zhongqiang Xiong , Shigeyuki Komura , Masao Doi

The equilibrium partitioning of linear polymer chains into flexible polymer networks is governed by intricate entropic constraints arising from configurational degrees of freedom of both chains and network, yet a quantitative understanding…

Soft Condensed Matter · Physics 2025-05-09 Haruki Takarai , Takashi Yasuda , Naoyuki Sakumichi , Takamasa Sakai

We present a novel and rigorous approach to the Langevin dynamics of ideal polymer chains subject to internal distance constraints. The permanent constraints are modelled by harmonic potentials in the limit when the strength of the…

Soft Condensed Matter · Physics 2009-10-28 M. P. Solf , T. A. Vilgis

In this thesis we study in detail the self-intersection properties of Random Walks. Although notoriously hard to tackle, these properties are crucially related to the excluded-volume effect and other central features of real polymers. Our…

Statistical Mechanics · Physics 2024-12-17 Simone Franchini

We establish an invariance principle corresponding to the universality of random matrices. More precisely, we prove the dynamical universality of random matrices in the sense that, if the random point fields $ \muN $ of $ \nN $-particle…

Probability · Mathematics 2022-02-01 Yosuke Kawamoto , Hirofumi Osada

The invariant of a link in three-sphere, associated with the cyclic quantum dilogarithm, depends on a natural number $N$. By the analysis of particular examples it is argued that for a hyperbolic knot (link) the absolute value of this…

q-alg · Mathematics 2008-02-03 R. M. Kashaev

The purpose of this tutorial is to introduce the main concepts behind normal and anomalous diffusion. Starting from simple, but well known experiments, a series of mathematical modeling tools are introduced, and the relation between them is…

Chaotic Dynamics · Physics 2008-05-06 Loukas Vlahos , Heinz Isliker , Yannis Kominis , Kyriakos Hizanidis

In a previous work, the first and third authors studied a random knot model for all two-bridge knots using billiard table diagrams. Here we present a closed formula for the distribution of the crossing numbers of such random knots. We also…

Geometric Topology · Mathematics 2018-08-13 Moshe Cohen , Chaim Even-Zohar , Sunder Ram Krishnan

We consider the fluctuations of the free energy of positive temperature directed polymers in thin rectangles (N,N^{\alpha}), \alpha < 3/14. For general weight distributions with finite fourth moment we prove that the distribution of these…

Probability · Mathematics 2012-04-30 Antonio Auffinger , Jinho Baik , Ivan Corwin

We use experimental and simulation data from the literature to infer five characteristic lengths, denoted $\xi_s$, $\xi_f$, $\xi_\Pi$, $\xi_\phi$, and $\xi_D$ of a semidilute polymer solution. The first two of these are defined in terms of…

Soft Condensed Matter · Physics 2009-11-07 Jung-Ren Huang , T. A. Witten

Classical diffusion in a random medium involves an exponential functional of Brownian motion. This functional also appears in the study of Brownian diffusion on a Riemann surface of constant negative curvature. We analyse in detail this…

Condensed Matter · Physics 2016-08-31 Alain COMTET , Cecile MONTHUS

Given a uniformly convergent sequence of ambient isotopies $(H_n)_{n\in\mathbb{N}}$, bijectivity of the limit function $H_\infty$ together with a minor compactness condition guarantees that $H_\infty$ is also an ambient isotopy. By…

Geometric Topology · Mathematics 2021-01-12 Forest Kobayashi

In our previous publication (Ref. 1) we have shown that the data for the normalized diffusion coefficient of the polymers, $D_p/D_{p0}$, falls on a master curve when plotted as a function of $h/\lambda_d$, where $h$ is the mean…

Soft Condensed Matter · Physics 2020-03-31 Valerio Sorichetti , Virginie Hugouvieux , Walter Kob

When an atomic-size break junction is mechanically stretched, the total conductance of the contact remains approximately constant over a wide range of elongations, although at the same time the transmissions of the individual channels…

Mesoscale and Nanoscale Physics · Physics 2020-04-20 S. Kirchner , J. Kroha , E. Scheer

Molecular dynamics simulations were conducted to investigate the dynamic properties of melts of nonconcatenated ring polymers and compared to melts of linear polymers. The longest rings were composed of N=1600 monomers per chain which…

Soft Condensed Matter · Physics 2011-05-02 Jonathan D. Halverson , Won Bo Lee , Gary S. Grest , Alexander Y. Grosberg , Kurt Kremer

The stochastic dynamics of an active particle undergoing a constant speed and additionally driven by an overall fluctuating torque is investigated. The random torque forces are expressed by a stochastic differential equation for the angular…

Statistical Mechanics · Physics 2011-12-22 Christian Weber , Paul K. Radtke , Lutz Schimansky-Geier , Peter Hänggi

Universality, encompassing critical exponents, scaling functions, and dimensionless quantities, is fundamental to phase transition theory. In finite systems, universal behaviors are also expected to emerge at the pseudocritical point.…

Statistical Mechanics · Physics 2026-05-26 Qiyuan Shi , Shuo Wei , Youjin Deng , Ming Li
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