Related papers: Lower Bounds for Optimal Alignments of Binary Sequ…
Binary sequences with minimal autocorrelations have applications in communication engineering, mathematics and computer science. In statistical physics they appear as groundstates of the Bernasconi model. Finding these sequences is a…
Schmidt proved in 2014 that if $\varepsilon>0$, almost all binary sequences of length $n$ have peak sidelobe level between $(\sqrt{2}-\varepsilon)\sqrt{n\log n}$ and $(\sqrt{2}+\varepsilon)\sqrt{n\log n}$. Because of the small gap between…
We present a general approach to the problem of determining tight asymptotic lower bounds for generalized central moments of the optimal alignment score of two independent sequences of i.i.d. random variables. At first, these are obtained…
Optimal sequence alignments depend heavily on alignment scoring parameters. Given input sequences, {\em parametric alignment} is the well-studied problem that asks for all possible optimal alignment summaries as parameters vary, as well as…
We show that the expected size of the maximum agreement subtree of two $n$-leaf trees, uniformly random among all trees with the shape, is $\Theta(\sqrt{n})$. To derive the lower bound, we prove a global structural result on a decomposition…
Sublinear time algorithms for approximating maximum matching size have long been studied. Much of the progress over the last two decades on this problem has been on the algorithmic side. For instance, an algorithm of Behnezhad [FOCS'21]…
Consider finite sequences $X_{[1,n]}=X_1\dots X_n$ and $Y_{[1,n]}=Y_1\dots Y_n$ of length $n$, consisting of i.i.d.\ samples of random letters from a finite alphabet, and let $S$ and $T$ be chosen i.i.d.\ randomly from the unit ball in the…
In 2009, Roeglin and Teng showed that the smoothed number of Pareto optimal solutions of linear multi-criteria optimization problems is polynomially bounded in the number $n$ of variables and the maximum density $\phi$ of the semi-random…
An orientable sequence of order $n$ is a cyclic binary sequence such that each length-$n$ substring appears at most once \emph{in either direction}. Maximal length orientable sequences are known only for $n\leq 7$, and a trivial upper bound…
The size of the largest common subtree (maximum agreement subtree) of two independent uniform random binary trees on $n$ leaves is known to be between orders $n^{1/8}$ and $n^{1/2}$. By a construction based on recursive splitting and…
We show that the number of all maximal $\alpha$-gapped repeats and palindromes of a word of length $n$ is at most $3(\pi^2/6 + 5/2) \alpha n$ and $7 (\pi^2 / 6 + 1/2) \alpha n - 5 n - 1$, respectively.
$\Theta_6$-Graphs graphs are important geometric graphs that have many applications especially in wireless sensor networks. They are equivalent to Delaunay graphs where empty equilateral triangles take the place of empty circles. We…
The maximum number of non-crossing straight-line perfect matchings that a set of $n$ points in the plane can have is known to be $O(10.0438^n)$ and $\Omega^*(3^n)$. The lower bound, due to Garc\'ia, Noy, and Tejel (2000) is attained by the…
We define a new class of binary matrices by maximizing the peak-sidelobe distances in the aperiodic autocorrelations. These matrices can be used as robust position marks for in-plane spatial alignment. The optimal square matrices of…
We refine a uniform algebraic approach for deriving upper bounds on reset thresholds of synchronizing automata. We express the condition that an automaton is synchronizing in terms of linear algebra, and obtain upper bounds for the reset…
In this work, a classical problem of the digital sequence design, or more precisely, finding binary sequences with optimal peak sidelobe level (PSL), is revisited. By combining some of our previous works, together with some mathematical…
We revisit the linear programming bounds for the size vs. distance trade-off for binary codes, focusing on the bounds for the almost-balanced case, when all pairwise distances are between $d$ and $n-d$, where $d$ is the code distance and…
We determine upper and lower bounds for the number of maximum matchings (i.e., matchings of maximum cardinality) $m(T)$ of a tree $T$ of given order. While the trees that attain the lower bound are easily characterised, the trees with…
Upper bounds on the maximum number of codewords in a binary code of a given length and minimum Hamming distance are considered. New bounds are derived by a combination of linear programming and counting arguments. Some of these bounds…
We prove that in every metric space where no line contains all the points, there are at least $\Omega(n^{2/3})$ lines. This improves the previous $\Omega(\sqrt{n})$ lower bound on the number of lines in general metric space, and also…