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A standard model for epidemics is the SIR model on a graph. We introduce a simple algorithm that uses the early infection times from a sample path of the SIR model to estimate the parameters this model, and we provide a performance…

Information Theory · Computer Science 2020-08-11 Charles Clum , Dustin G. Mixon

Although we have made progress in understanding disease spread in complex systems with non-Poissonian activity patterns, current models still fail to capture the full range of recovery time distributions. In this paper, we propose an…

Social and Information Networks · Computer Science 2025-11-25 Jiexi Tang , Yichao Yao , Meiling Xie , Minyu Feng

The study of social networks, and in particular the spread of disease on networks, has attracted considerable recent attention in the physics community. In this paper, we show that a large class of standard epidemiological models, the…

Statistical Mechanics · Physics 2009-11-07 M. E. J. Newman

We present a methodology for systematically extending epidemic models to multilevel and multiscale spatio-temporal pandemic ones. Our approach builds on the use of coloured stochastic and continuous Petri nets facilitating the sound…

Populations and Evolution · Quantitative Biology 2021-07-05 Shannon Connolly , David Gilbert , Monika Heiner

A plethora of prediction models of SARS-CoV-2 pandemic were proposed in the past. Prediction performances not only depend on the structure and features of the model, but also on its parametrization. Official databases are often biased due…

Populations and Evolution · Quantitative Biology 2021-09-27 Yuri Kheifetz , Holger Kirsten , Markus Scholz

We study a symmetric two-disease SIR co-infection model on networks in which co-infected individuals recover at a rate distinct from that of single infections. The model explicitly represents all co-infection states and features absorbing…

Statistical Mechanics · Physics 2025-12-22 Gerardo Palafox-Castillo , Ericka Fabiola Vázquez-Alcalá , Arturo Berrones-Santos

An epidemic model where disease transmission can occur either through global contacts or through local, nearest neighbor interactions is considered. The classical SIR--model describing the global interactions is extended by adding…

Populations and Evolution · Quantitative Biology 2022-02-02 Thomas Götz

We propose an approach to model spatial heterogeneity in SIR-type models for the spread of epidemics via \emph{nonlocal aggregation terms}. More precisely, we first consider an SIR model with spatial movements driven by nonlocal aggregation…

Analysis of PDEs · Mathematics 2025-04-03 Marco Di Francesco , Fatemeh Ghaderi Zefreh

The duration, type and structure of connections between individuals in real-world populations play a crucial role in how diseases invade and spread. Here, we incorporate the aforementioned heterogeneities into a model by considering a…

Physics and Society · Physics 2018-04-05 Rosanna C Barnard , Istvan Z Kiss , Luc Berthouze , Joel C Miller

A model of reactive social distancing in epidemics is proposed, in which the infection rate changes with the number infected. The final-size equation for the total number that the epidemic will infect can be derived analytically, as can the…

Populations and Evolution · Quantitative Biology 2020-03-19 Rose Baker

Many models of virus propagation in Computer Networks inspired by {\bf SIS,SIR,}\\ {\bf SEIR}, etc. epidemic disease propagation mathematical models that can be found in the epidemiology field have been proposed in the last two decades. The…

Optimization and Control · Mathematics 2021-01-05 Carlos Rodriguez Lucatero

We analyze the identifiability and observability of the well-known SIR epidemic model with an additional compartment Q of the sub-population of infected individuals that are placed in quarantine (SIQR model), considering that the flow of…

Dynamical Systems · Mathematics 2021-03-09 Frédéric Hamelin , Abderrahman Iggidr , Alain Rapaport , Gauthier Sallet , Max Souza

This paper considers a stochastic SIR (susceptible$\to$infective$\to$removed) epidemic model in which individuals may make infectious contacts in two ways, both within `households' (which for ease of exposition are assumed to have equal…

Probability · Mathematics 2015-03-13 Frank Ball , David Sirl , Pieter Trapman

One of the popular dynamics on complex networks is the epidemic spreading. An epidemic model describes how infections spread throughout a network. Among the compartmental models used to describe epidemics, the…

Physics and Society · Physics 2011-07-14 Faryad Darabi Sahneh , Caterina Scoglio

The pattern formation and spatial spread of infectious populations are investigated using a kernel-based Susceptible-Infectious-Recovered (SIR) model applicable across a wide range of basic reproduction numbers $R_o$. The focus is on the…

Physics and Society · Physics 2022-09-13 Shuolin Li , Craig Henriquez , Gabriel Katul

We study the qualitative properties of a spatial diffusive heterogeneous SIR model, that appears in mathematical epidemiology to describe the spread of an infectious disease in a population. The model we consider consists in a system of…

Analysis of PDEs · Mathematics 2020-05-15 Romain Ducasse

Self-adaptive dynamics occurs in many physical systems such as socio-economics, neuroscience, or biophysics. We formalize a self-adaptive modeling approach, where adaptation takes place within a set of strategies based on the history of the…

Adaptation and Self-Organizing Systems · Physics 2022-04-01 Konstantin Clauß , Christian Kuehn

The results of Kermack-McKendrick SIR model are planned to be reproduced by cellular automata (CA) lattice model. The CA algorithms are proposed to study the model of epidemic, systematically. The basic goal is to capture the effects of…

Populations and Evolution · Quantitative Biology 2022-08-30 Agniva Datta , Muktish Acharyya

The susceptible-infected-recovered (SIR) model and its variants form the foundation of our understanding of the spread of diseases. Here, each agent can be in one of three states (susceptible, infected, or recovered), and transitions…

Disordered Systems and Neural Networks · Physics 2023-12-25 Claudia Merger , Jasper Albers , Carsten Honerkamp , Moritz Helias

In this work we review a class of deterministic nonlinear models for the propagation of infectious diseases over contact networks with strongly-connected topologies. We consider network models for susceptible-infected (SI),…

Social and Information Networks · Computer Science 2017-01-13 Wenjun Mei , Shadi Mohagheghi , Sandro Zampieri , Francesco Bullo