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What is information, physically, and why does it so reliably emerge in living, cultural, and technological systems? Existing theories quantify uncertainty, cost, or compressibility, but do not identify which physical structures count as…

Neurons and Cognition · Quantitative Biology 2025-12-17 Wouter van der Wijngaart

Reproducibility remains a central challenge in machine learning (ML), especially in collaborative eScience projects where teams iterate over data, features, and models. Current ML workflows are often dynamic yet fragmented, relying on…

Machine Learning · Computer Science 2025-06-23 Zhiwei Li , Carl Kesselman , Tran Huy Nguyen , Benjamin Yixing Xu , Kyle Bolo , Kimberley Yu

High-quality data is essential for training large generative models, yet the vast reservoir of real data available online has become nearly depleted. Consequently, models increasingly generate their own data for further training, forming…

Machine Learning · Computer Science 2025-02-27 Shi Fu , Yingjie Wang , Yuzhu Chen , Xinmei Tian , Dacheng Tao

This survey concerns subspace recycling methods, a popular class of iterative methods that enable effective reuse of subspace information in order to speed up convergence and find good initial guesses over a sequence of linear systems with…

Numerical Analysis · Mathematics 2020-07-30 Kirk M. Soodhalter , Eric de Sturler , Misha Kilmer

It has been suggested that major transitions in evolution require the emergence of novelties, often associated to the cooperative behaviour of previously existing objects or agents. A key innovation involves the first cooperative…

Adaptation and Self-Organizing Systems · Physics 2015-08-07 Jordi Piñero , Ricard Solé

Environmental fluctuations can shape replicator dynamics, with important consequences for both prebiotic and modern ecosystems. However, it remains unclear how simple replicators can acquire and use information about fluctuating…

Biological Physics · Physics 2026-05-25 Jordi Piñero , Damian R. Sowinski , Gourab Ghoshal , Adam Frank , Artemy Kolchinsky

HyperLTL, the extension of Linear Temporal Logic by trace quantifiers, is a uniform framework for expressing information flow policies by relating multiple traces of a security-critical system. HyperLTL has been successfully applied to…

Logic in Computer Science · Computer Science 2019-12-17 Corto Mascle , Martin Zimmermann

This paper develops an envelope-based approach to establish a link between information and queueing theory. Unlike classical, equilibrium information theory, information envelopes focus on the dynamics of sources and coders, using functions…

Performance · Computer Science 2015-03-19 Ralf Lübben , Markus Fidler

Homoclinic and heteroclinic orbits provide a skeleton of the full dynamics of a chaotic dynamical system and are the foundation of semiclassical sums for quantum wave packet, coherent state, and transport quantities. Here, the homoclinic…

Chaotic Dynamics · Physics 2019-03-27 Jizhou Li , Steven Tomsovic

Machine-learned interatomic potentials (MILPs) are rapidly gaining interest for molecular modeling, as they provide a balance between quantum-mechanical level descriptions of atomic interactions and reasonable computational efficiency.…

Computational Physics · Physics 2024-08-30 Gustavo R. Pérez-Lemus , Yinan Xu , Yezhi Jin , Pablo F. Zubieta Rico , Juan J. de Pablo

This paper studies the haplotype assembly problem from an information theoretic perspective. A haplotype is a sequence of nucleotide bases on a chromosome, often conveniently represented by a binary string, that differ from the bases in the…

Information Theory · Computer Science 2014-05-13 Hongbo Si , Haris Vikalo , Sriram Vishwanath

Machine learning is facing a 'reproducibility crisis' where a significant number of works report failures when attempting to reproduce previously published results. We evaluate the sources of reproducibility failures using a meta-analysis…

Machine Learning · Computer Science 2023-05-23 Iordanis Fostiropoulos , Bowman Brown , Laurent Itti

The response time of physical computational elements is finite, and neurons are no exception. In hierarchical models of cortical networks each layer thus introduces a response lag. This inherent property of physical dynamical systems…

Neurons and Cognition · Quantitative Biology 2021-10-28 Paul Haider , Benjamin Ellenberger , Laura Kriener , Jakob Jordan , Walter Senn , Mihai A. Petrovici

Integrating heterogeneous data sources and expert knowledge is essential for overcoming data scarcity and enhancing estimation accuracy. Two main frameworks naturally arise to perform the integration of these multiple sources: sequential…

Methodology · Statistics 2025-11-26 Mario Figueira , David Conesa , Antonio López-Quílez , Håvard Rue

Beyond the genetic code, there is another layer of information encoded as chemical modifications on histone proteins positioned along the DNA. Maintaining these modifications is crucial for survival and identity of cells. How the…

Genomics · Quantitative Biology 2020-05-15 Nithya Ramakrishnan , Sibi Raj B Pillai , Ranjith Padinhateeri

When discussing the black hole information problem the term ``information flow'' is frequently used in a rather loose fashion. In this article I attempt to make this notion more concrete. I consider a Hilbert space which is constructed as a…

High Energy Physics - Theory · Physics 2010-04-08 Andreas Albrecht

The compartmentalization of distinct templates in protocells and the exchange of templates between them (migration) are key elements of a modern scenario for prebiotic evolution. Here we use the diffusion approximation of population…

Populations and Evolution · Quantitative Biology 2014-03-27 Jose F. Fontanari , Maurizio Serva

Constraints on entropies are considered to be the laws of information theory. Even though the pursuit of their discovery has been a central theme of research in information theory, the algorithmic aspects of constraints on entropies remain…

Information Theory · Computer Science 2020-04-28 Mahmoud Abo Khamis , Phokion G. Kolaitis , Hung Q. Ngo , Dan Suciu

HyperLTL is an extension of linear-time temporal logic for the specification of hyperproperties, i.e., temporal properties that relate multiple computation traces. HyperLTL can express information flow policies as well as properties like…

Logic in Computer Science · Computer Science 2020-05-18 Norine Coenen , Bernd Finkbeiner , César Sánchez , Leander Tentrup

Imitation is a basic updating mechanism for strategy evolution in structured populations, determining how individuals sample social information and translate it into behavioral changes. Higher-order networks, such as hypergraphs, generalize…

Physics and Society · Physics 2026-02-11 Bingxin Lin , Lei Zhou , Hao Fang