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The run-and-tumble particle (RTP) is one of the simplest examples of an active particle in which the direction of constant motion randomly switches. In the one-dimensional (1D) case this means switching between rightward and leftward…

Statistical Mechanics · Physics 2024-11-26 Paul C Bressloff

A density matrix describes the statistical state of a quantum system. It is a powerful formalism to represent both the quantum and classical uncertainty of quantum systems and to express different statistical operations such as measurement,…

Machine Learning · Computer Science 2024-05-01 Fabio A. González , Alejandro Gallego , Santiago Toledo-Cortés , Vladimir Vargas-Calderón

In this article we study a fully relativistic model of a two dimensional hard-disk gas. This model avoids the general problems associated with relativistic particle collisions and is therefore an ideal system to study relativistic effects…

Statistical Mechanics · Physics 2009-11-13 Afshin Montakhab , Malihe Ghodrat , Mahmood Barati

In this thesis, we study three physically relevant models of strongly correlated random variables: trapped fermions, random matrices and random walks. In the first part, we show several exact mappings between the ground state of a trapped…

Statistical Mechanics · Physics 2019-06-24 Bertrand Lacroix-A-Chez-Toine

Optical microscopy provides rich spatio-temporal information characterizing in vivo molecular motion. However, effective forces and other parameters used to summarize molecular motion change over time in live cells due to latent state…

Quantitative Methods · Quantitative Biology 2015-11-06 Christopher P. Calderon , Kerry S. Bloom

We introduce a path sampling method for obtaining statistical properties of an arbitrary stochastic dynamics. The method works by decomposing a trajectory in time, estimating the probability of satisfying a progress constraint, modifying…

Statistical Mechanics · Physics 2015-06-04 Nicholas Guttenberg , Aaron R. Dinner , Jonathan Weare

There has been a recent surge of interest in understanding charge transport at atomic scales. The motivations are myriad, including understanding the conductance properties of peptides measured experimentally. In this study, we propose a…

Biological Physics · Physics 2025-06-09 Roisin Dempsey Braddell , Jone Uria-Albizuri , Jean-Bernard Bru , Serafim Rodrigues

Calculations and mechanistic explanations for the probabilistic movement of objects at the highly relevant cm length scales has been lacking and overlooked due to the complexity of current techniques. Predicting the final-configuration…

We study the 1D Hamilton systems and their statistical behaviour, assuming the initial microcanonical distribution and describing its change under a parametric kick, which by definition means a discontinuous jump of a control parameter of…

Chaotic Dynamics · Physics 2015-06-17 Dimitris Andresas , Benjamin Batistic , Marko Robnik

We examine the localization properties of the three-dimensional (3D) Anderson Hamiltonian with off-diagonal disorder using the transfer-matrix method (TMM) and finite-size scaling (FSS). The nearest-neighbor hopping elements are chosen…

Disordered Systems and Neural Networks · Physics 2007-05-23 P. Cain , R. A. Roemer , M. Schreiber

A well-known approach to describe the dynamics of an open quantum system is to compute the master equation evolving the reduced density matrix of the system. This approach plays an important role in describing excitation transfer through…

Quantum Physics · Physics 2022-10-25 Kimara Naicker , Ilya Sinayskiy , Francesco Petruccione

We examine the fundamental aspects of statistical mechanics, dividing the problem into a discussion purely about probability, which we analyse from a Bayesian standpoint. We argue that the existence of a unique maximising probability…

Statistical Mechanics · Physics 2015-12-07 B. Buck , A. C. Merchant

We study numerical methods for dissipative particle dynamics (DPD), which is a system of stochastic differential equations and a popular stochastic momentum-conserving thermostat for simulating complex hydrodynamic behavior at mesoscales.…

Numerical Analysis · Mathematics 2021-06-08 Xiaocheng Shang

We study the entanglement spectrum of a translationally-invariant lattice system under a random partition, implemented by choosing each site to be in one subsystem with probability $p\in[0, 1]$. We apply this random partitioning to a…

Strongly Correlated Electrons · Physics 2015-06-23 Sagar Vijay , Liang Fu

Accurate descriptions of reference systems are a central task in liquid-state theories for the study of more complex systems. Using scaled particle theory (SPT), we derive a fully analytical description of the thermodynamic properties of a…

Soft Condensed Matter · Physics 2026-03-31 T. Hvozd , M. Hvozd , M. Holovko

The densities of states are evaluated for very short chain molecules made up of overlapping monomers, using a model which has previously been shown to produce helical structure. The results of numerical calculations are presented for…

Statistical Mechanics · Physics 2009-11-13 James E. Magee , Leo Lue , Robin A. Curtis

Computer simulations generate trajectories at a single, well-defined thermodynamic state point. Statistical reweighting offers the means to reweight static and dynamical properties to different equilibrium state points by means of analytic…

Computational Physics · Physics 2019-12-25 Marius Bause , Timon Wittenstein , Kurt Kremer , Tristan Bereau

We derive a powerful yet simple method for analyzing the local density of states in gapless one dimensional fermionic systems, including extensions such as momentum dependent interaction parameters and hard-wall boundaries. We study the…

Strongly Correlated Electrons · Physics 2010-01-19 Imke Schneider , Sebastian Eggert

Equilibrium statistical mechanics is intended to link the microscopic dynamics of particles to the thermodynamic laws for macroscopic quantities. However, the modern statistical theory is faced with significant difficulties, as applied to…

Statistical Mechanics · Physics 2016-03-15 A. G. Godizov , A. A. Godizov

We propose a new statistical mechanics model for the melting transition of DNA. Base pairing and stacking are treated as separate degrees of freedom, and the interplay between pairing and stacking is described by a set of local rules which…

Soft Condensed Matter · Physics 2007-05-23 Vassili Ivanov , Dmitri Piontkovski , Giovanni Zocchi
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