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Robustness across heterogeneous optimization regimes remains a central challenge in bound-constrained continuous optimization. In practice, users often prefer optimizers that remain reliable across different dimensionalities, landscape…

Neural and Evolutionary Computing · Computer Science 2026-05-28 Khoirul Faiq Muzakka , Ahsani Hafizhu Shali , Haris Suhendar , Sören Möller , Martin Finsterbusch

This work formally investigates the differential evolution indicators as a tool for ultrasonic tracking of elastic transformation and fracturing in randomly heterogeneous solids. Within the framework of periodic sensing, it is assumed that…

Analysis of PDEs · Mathematics 2023-03-29 Fatemeh Pourahmadian , Houssem Haddar

Evolving biomolecular networks have to combine the stability against perturbations with flexibility allowing their constituents to assume new roles in the cell. Gene duplication followed by functional divergence of associated proteins is a…

Molecular Networks · Quantitative Biology 2007-05-23 Sergei Maslov , Kim Sneppen , Kasper Astrup Eriksen

Eukaryotic cells are often exposed to fluctuations in growth conditions as well as endogenous and exogenous stress-related agents. In addition, during development global patterns of gene transcription change dramatically, and these changes…

Genomics · Quantitative Biology 2008-12-23 John Herrick

The X chromosome is present as a single copy in the heterogametic sex, and this hemizygosity is expected to drive unusual patterns of evolution on the X relative to the autosomes. For example, the hemizgosity of the X may lead to a lower…

Populations and Evolution · Quantitative Biology 2015-03-20 Melek A. Kayserili , Dave T. Gerrard , Pavel Tomancak , Alex T. Kalinka

Using an optical tweezers apparatus, we demonstrate three-dimensional control of nanodiamonds in solution with simultaneous readout of ground-state electron-spin resonance (ESR) transitions in an ensemble of diamond nitrogen-vacancy (NV)…

Methods that generate networks sharing a given degree distribution and global clustering can induce changes in structural properties other than that controlled for. Diversity in structural properties, in turn, can affect the outcomes of…

Social and Information Networks · Computer Science 2018-09-18 Peter Overbury , István Z. Kiss , Luc Berthouze

In this paper we explore relevant electrical properties of two olfactory receptors (ORs), one from rat OR I7 and the other from human OR 17-40, which are of interest for the realization of smell nanobiosensors. The investigation compares…

Soft Condensed Matter · Physics 2015-05-27 E. Alfinito , J. -F. Millithaler , L. Reggiani

This paper shows that ResNets, NeuralODEs, and CT-RNNs, are particular neural regulatory networks (NRNs), a biophysical model for the nonspiking neurons encountered in small species, such as the C.elegans nematode, and in the retina of…

Neurons and Cognition · Quantitative Biology 2020-03-20 Radu Grosu

Significant phylogenetic codivergence between plant or animal hosts ($H$) and their symbionts or parasites ($P$) indicate the importance of their interactions on evolutionary time scales. However, valid and realistic methods to test for…

Populations and Evolution · Quantitative Biology 2008-08-28 Chris L. Schardl , Kelly D. Craven , Adam Lindstrom , Skyler Speakman , Arnold Stromberg , Ruriko Yoshida

Behavioural differences across organisms, whether healthy or pathological, are closely tied to the structure of their neural circuits. Yet, the fine-scale synaptic changes that give rise to these variations remain poorly understood, in part…

Computer Vision and Pattern Recognition · Computer Science 2025-09-23 Samia Mohinta , Daniel Franco-Barranco , Shi Yan Lee , Albert Cardona

In eukaryotic cells, KDEL receptors (KDELRs) facilitate the retrieval of endoplasmic reticulum (ER) luminal proteins from the Golgi compartment back to the ER. Apart from the well-documented retention function, recent findings reveal that…

Biological Physics · Physics 2020-09-09 Achim Bauer , Ludger Santen , Manfred J. Schmitt , M. Reza Shaebani , Björn Becker

Walking animals, like stick insects, cockroaches or ants, demonstrate a fascinating range of locomotive abilities and complex behaviors. The locomotive behaviors can consist of a variety of walking patterns along with adaptation that allow…

Neural and Evolutionary Computing · Computer Science 2016-08-08 Sakyasingha Dasgupta , Dennis Goldschmidt , Florentin Wörgötter , Poramate Manoonpong

Escherichia coli is one of many bacterial inhabitants found in human intestines and any adaptation as a result of mutations may affect its host. A commonly used technique employed to study these mutations is Restriction Fragment Length…

Genomics · Quantitative Biology 2023-02-27 Zhu En Chay , Chin How Lee , Kun Cheng Lee , Jack SH Oon , Maurice HT Ling

Protein-protein interactions are fundamental to many biological processes. Experimental screens have identified tens of thousands of interactions and structural biology has provided detailed functional insight for select 3D protein…

A central and long-standing issue in evolutionary theory is the origin of the biological variation upon which natural selection acts1. Some hypotheses suggest that evolutionary change represents an adaptation to the surrounding environment…

Statistical Mechanics · Physics 2007-05-23 J. Podani , Z. N. Oltvai , H. Jeong , B. Tombor , A. -L. Barabasi , E. Szathmary

Segmentation is an important task in a wide range of computer vision applications, including medical image analysis. Recent years have seen an increase in the complexity of medical image segmentation approaches based on sophisticated…

Image and Video Processing · Electrical Eng. & Systems 2023-12-19 Tariq M Khan , Syed S. Naqvi , Erik Meijering

The study of their morphological coherence allows us to obtain a better understanding of the morphological evolution of open clusters. We employed the ellipsoid fitting method to delineate the 3D spatial structure of the sample clusters…

Astrophysics of Galaxies · Physics 2024-07-24 Qingshun Hu , Yu Zhang , Songmei Qin , Jing Zhong , Li Chen , Yangping Luo

Horseshoe crabs are marine arthropods with a fossil record extending back approximately 450 million years. They exhibit remarkable morphological stability over their long evolutionary history, retaining a number of ancestral arthropod…

Genomics · Quantitative Biology 2014-06-19 Carlos Nossa , Paul Havlak , Jia-Xing Yue , Jie Lv , Kim Vincent , H Jane Brockmann , Nicholas H Putnam

Despite recent advances in our ability to detect adaptive evolution involving the cis-regulation of gene expression, our knowledge of the molecular mechanisms underlying these adaptations has lagged far behind. Across all model organisms…

Populations and Evolution · Quantitative Biology 2013-08-08 Jessica Chang , Yiqi Zhou , Xiaoli Hu , Lucia Lam , Cameron Henry , Erin M. Green , Ryosuke Kita , Michael S. Kobor , Hunter B. Fraser
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