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This paper investigates questions related to the modularity in discrete models of biological interaction networks. We develop a theoretical framework based on the analysis of their asymptotic dynamics. More precisely, we exhibit formal…

Discrete Mathematics · Computer Science 2012-01-16 Franck Delaplace , Hanna Klaudel , Tarek Melliti , Sylvain Sené

Distributed synchronization is known to occur at several scales in the brain, and has been suggested as playing a key functional role in perceptual grouping. State-of-the-art visual grouping algorithms, however, seem to give comparatively…

Computer Vision and Pattern Recognition · Computer Science 2008-07-21 Guoshen Yu , Jean-Jacques Slotine

Modeling the behavior of coupled networks is challenging due to their intricate dynamics. For example in neuroscience, it is of critical importance to understand the relationship between the functional neural processes and anatomical…

Machine Learning · Computer Science 2021-04-20 Hongyuan You , Sikun Lin , Ambuj K. Singh

Monotone systems constitute one of the most important classes of dynamical systems used in mathematical biology modeling. The objective of this paper is to extend the notion of monotonicity to systems with inputs and outputs, a necessary…

Quantitative Methods · Quantitative Biology 2007-05-23 David Angeli , Eduardo D. Sontag

We investigate the dynamics of a network consisting of an array of identical cortical units with nearest neighbor interactions under periodic arousal. Each unit consists of two interconnected populations of neurons tuned to a state in which…

Neurons and Cognition · Quantitative Biology 2019-02-12 Leandro M. Alonso

Real-world networks in technology, engineering and biology often exhibit dynamics that cannot be adequately reproduced using network models given by smooth dynamical systems and a fixed network topology. Asynchronous networks give a…

Dynamical Systems · Mathematics 2017-02-07 Christian Bick , Michael Field

An artificial neural network is presented based on the idea of connections between units that are only active for a specific range of input values and zero outside that range (and so are not evaluated outside the active range). The…

Neural and Evolutionary Computing · Computer Science 2016-06-15 John Loverich

A computer model is described which is used to assess the dynamical complexity of a class of networks of spiking neurons with small-world properties. Networks are constructed by forming an initially segregated set of highly intra-connected…

Biological Physics · Physics 2009-11-13 Murray Shanahan

Latent position models are widely used for the analysis of networks in a variety of research fields. In fact, these models possess a number of desirable theoretical properties, and are particularly easy to interpret. However, statistical…

Computation · Statistics 2023-03-08 Riccardo Rastelli , Florian Maire , Nial Friel

The study of the sub-structure of complex networks is of major importance to relate topology and functionality. Many efforts have been devoted to the analysis of the modular structure of networks using the quality function known as…

Data Analysis, Statistics and Probability · Physics 2011-07-01 Belkacem Serrour , Alex Arenas , Sergio Gomez

Temporal networks are commonly used to represent systems where connections between elements are active only for restricted periods of time, such as networks of telecommunication, neural signal processing, biochemical reactions and human…

Data Analysis, Statistics and Probability · Physics 2011-11-15 Lauri Kovanen , Márton Karsai , Kimmo Kaski , János Kertész , Jari Saramäki

Physical systems exhibiting hysteresis are increasingly being used in neuromorphic and in-memory computing research. Generally, the resistance switching of devices with rate-independent hysteresis are being investigated for their use as…

Computational Physics · Physics 2025-03-17 Lina Jaurigue , Kathy Lüdge

This paper presents a framework based on matrices of monoids for the study of coupled cell networks. We formally prove within the proposed framework, that the set of results about invariant synchrony patterns for unweighted networks also…

Multiagent Systems · Computer Science 2022-01-13 Pedro M. Sequeira , António P. Aguiar , João Hespanha

In this paper, we demonstrate that considering experiments in a graph-theoretic manner allows us to exploit automorphisms of the graph to reduce the number of evaluations of candidate designs for those experiments, and thus find optimal…

Methodology · Statistics 2018-02-28 Ben M. Parker , Steven G Gilmour , Vasiliki Koutra

In many real network systems, nodes usually cooperate with each other and form groups, in order to enhance their robustness to risks. This motivates us to study a new type of percolation, group percolation, in interdependent networks under…

Physics and Society · Physics 2018-03-21 Zexun Wang , Dong Zhou , Yanqing Hu

We introduce a framework for the modeling of sequential data capturing pathways of varying lengths observed in a network. Such data are important, e.g., when studying click streams in information networks, travel patterns in transportation…

Social and Information Networks · Computer Science 2017-11-20 Ingo Scholtes

Recurrent neural networks (RNNs) have been used extensively and with increasing success to model various types of sequential data. Much of this progress has been achieved through devising recurrent units and architectures with the…

Machine Learning · Statistics 2017-03-06 Yacine Jernite , Edouard Grave , Armand Joulin , Tomas Mikolov

Recurrent neural networks are a powerful tool, but they are very sensitive to their hyper-parameter configuration. Moreover, training properly a recurrent neural network is a tough task, therefore selecting an appropriate configuration is…

Machine Learning · Computer Science 2019-03-12 Andrés Camero , Jamal Toutouh , Enrique Alba

Since network data commonly consists of observations from a single large network, researchers often partition the network into clusters in order to apply cluster-robust inference methods. Existing such methods require clusters to be…

Econometrics · Economics 2023-02-14 Michael P. Leung

Biochemical networks are used in computational biology, to model the static and dynamical details of systems involved in cell signaling, metabolism, and regulation of gene expression. Parametric and structural uncertainty, as well as…

Molecular Networks · Quantitative Biology 2014-10-15 Ovidiu Radulescu , Alexander N. Gorban , Andrei Zinovyev , Vincent Noel
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