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We propose the Graph2Graph Transformer architecture for conditioning on and predicting arbitrary graphs, and apply it to the challenging task of transition-based dependency parsing. After proposing two novel Transformer models of…

Computation and Language · Computer Science 2021-03-22 Alireza Mohammadshahi , James Henderson

Large language models (LLMs) have demonstrated impressive capabilities in natural language processing. However, their internal mechanisms are still unclear and this lack of transparency poses unwanted risks for downstream applications.…

Computation and Language · Computer Science 2023-11-30 Haiyan Zhao , Hanjie Chen , Fan Yang , Ninghao Liu , Huiqi Deng , Hengyi Cai , Shuaiqiang Wang , Dawei Yin , Mengnan Du

Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the given pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation…

Computational Complexity · Computer Science 2019-02-12 Massimo Equi , Roberto Grossi , Alexandru I. Tomescu , Veli Mäkinen

Graph transformation is the rule-based modification of graphs, and is a discipline dating back to the 1970s. In general, to match the left-hand graph of a fixed rule within a host graph requires polynomial time, but to improve matching…

Logic in Computer Science · Computer Science 2021-01-05 Graham Campbell , Detlef Plump

Learning an explainable classifier often results in low accuracy model or ends up with a huge rule set, while learning a deep model is usually more capable of handling noisy data at scale, but with the cost of hard to explain the result and…

Artificial Intelligence · Computer Science 2022-11-11 Yuanlong Li , Gaopan Huang , Min Zhou , Chuan Fu , Honglin Qiao , Yan He

Graphs and graph transformation systems are a frequently used modelling technique for a wide range of different domains, cover- ing areas as diverse as refactorings, network topologies or reconfigurable software. Being a formal method,…

Programming Languages · Computer Science 2015-03-17 Dominik Steenken , Heike Wehrheim , Daniel Wonisch

Interventional causal models describe several joint distributions over some variables used to describe a system, one for each intervention setting. They provide a formal recipe for how to move between the different joint distributions and…

Machine Learning · Statistics 2021-08-06 Eigil F. Rischel , Sebastian Weichwald

Graph transformers have gained popularity in various graph-based tasks by addressing challenges faced by traditional Graph Neural Networks. However, the quadratic complexity of self-attention operations and the extensive layering in graph…

Machine Learning · Computer Science 2023-09-20 Reza Shirkavand , Heng Huang

This work focuses on the novel problem setting of generating graphs conditioned on a description of the graph's functional requirements in a downstream task. We pose the problem as a text-to-text generation problem and focus on the approach…

Machine Learning · Computer Science 2023-11-02 Peter A. Zachares , Vahan Hovhannisyan , Alan Mosca , Yarin Gal

Graphs are fundamental data structures which concisely capture the relational structure in many important real-world domains, such as knowledge graphs, physical and social interactions, language, and chemistry. Here we introduce a powerful…

Machine Learning · Computer Science 2018-03-12 Yujia Li , Oriol Vinyals , Chris Dyer , Razvan Pascanu , Peter Battaglia

Model generation is a problem complementary to theorem proving and is important for fault analysis and debugging of formal specifications of security protocols, programs and terminological definitions. This paper discusses several ways of…

Artificial Intelligence · Computer Science 2016-12-01 Peter Baumgartner , Renate A. Schmidt

We introduce the concept of pattern graphs--directed acyclic graphs representing how response patterns are associated. A pattern graph represents an identifying restriction that is nonparametrically identified/saturated and is often a…

Methodology · Statistics 2020-12-04 Yen-Chi Chen

The several algebraic approaches to graph transformation proposed in the literature all ensure that if an item is preserved by a rule, so are its connections with the context graph where it is embedded. But there are applications in which…

Logic in Computer Science · Computer Science 2015-06-09 Anadrea Corradini , Dominique Duval , Rachid Echahed , Frédéric Prost , Leila Ribeiro

This work continues the development of an intensional approach to computability initiated in previous work, in which programs and computations, rather than functions, constitute the primary objects of study. In this setting, models of…

Logic in Computer Science · Computer Science 2026-05-19 Thomas Seiller

We address the problem of defining graph transformations by the simultaneous application of direct transformations even when these cannot be applied independently of each other. An algebraic approach is adopted, with production rules of the…

Logic in Computer Science · Computer Science 2019-04-19 Thierry Boy de la Tour , Rachid Echahed

Topology optimization enables the design of highly efficient and complex structures, but conventional iterative methods, such as SIMP-based approaches, often suffer from high computational costs and sensitivity to initial conditions.…

Computational Engineering, Finance, and Science · Computer Science 2025-09-18 Aaron Lutheran , Srijan Das , Alireza Tabarraei

This report presents a set-theoretic framework for the instantiation of rule schemes in the Jerboa platform, a tool for developing domain-specific geometric modelers. Jerboa enables the design of geometric modeling operations as graph…

Computational Geometry · Computer Science 2024-11-26 Romain Pascual

Formally capturing the transition from a continuous model to a discrete model is investigated using model based refinement techniques. A very simple model for stopping (eg. of a train) is developed in both the continuous and discrete…

Software Engineering · Computer Science 2011-06-22 Richard Banach , Huibiao Zhu , Wen Su , Runlei Huang

We present a system for generating parsers based directly on the metaphor of parsing as deduction. Parsing algorithms can be represented directly as deduction systems, and a single deduction engine can interpret such deduction systems so as…

cmp-lg · Computer Science 2008-02-03 Stuart M. Shieber , Yves Schabes , Fernando C. N. Pereira

As larger deep learning models are hard to interpret, there has been a recent focus on generating explanations of these black-box models. In contrast, we may have apriori explanations of how models should behave. In this paper, we formalize…

Machine Learning · Computer Science 2023-12-27 Rattana Pukdee , Dylan Sam , J. Zico Kolter , Maria-Florina Balcan , Pradeep Ravikumar