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In biochemistry, heteropolymers encoding biological information are assembled out of equilibrium by sequentially incorporating available monomers found in the environment. Current models of polymerization treat monomer incorporation as a…

Statistical Mechanics · Physics 2019-12-18 Davide Chiuchiù , James Ferrare , Simone Pigolotti

Many developing quantum technologies make use of quantum networks of different types. Even linear quantum networks are nontrivial, as the output photon distributions can be exponentially complex. Despite this, they can still be…

Quantum Physics · Physics 2022-03-02 A. Dellios , Peter D. Drummond , Bogdan Opanchuk , Run Yan Teh , Margaret D. Reid

Microgels made of poly(N-isopropylacrylamide) are the prototype of soft, thermoresponsive particles widely used to study fundamental problems in condensed matter physics. However, their internal structure is far from homogeneous, and…

Soft Condensed Matter · Physics 2025-02-12 Susana Marín-Aguilar , Emanuela Zaccarelli

Molecular simulations provide a powerful means to unravel the complex relationships between network architecture and the mechanical response of polymer networks, with a particular emphasis on rupture and fracture phenomena. Although…

Soft Condensed Matter · Physics 2026-02-02 Yuichi Masubuchi , Takato Ishida , Yusuke Koide , Takashi Uneyama

We propose a high-speed and accurate hybrid dynamic density functional theory for the computer simulations of the phase separation processes of polymer melts and blends. The proposed theory is a combination of the dynamic self-consistent…

Soft Condensed Matter · Physics 2009-11-11 Takashi Honda , Toshihiro Kawakatsu

The physical chemistry of liquid-liquid phase separation (LLPS) of polymer solutions bears directly on the assembly of biologically functional droplet-like bodies from proteins and nucleic acids. These biomolecular condensates include…

Biomolecules · Quantitative Biology 2020-01-31 Yi-Hsuan Lin , Jacob P. Brady , Hue Sun Chan , Kingshuk Ghosh

The interaction of phase-separating systems with chemical reactions is of great interest in various contexts, from biology to material science. In biology, phase separation is thought to be the driving force behind the formation of…

Soft Condensed Matter · Physics 2026-01-08 Franco Blanchini , Elisa Franco , Giulia Giordano , Dino Osmanovic

DNA is now firmly established as a versatile and robust platform for achieving synthetic nanostructures. While the folding of single molecules into complex structures is routinely achieved through engineering basepair sequences, much less…

Soft Condensed Matter · Physics 2025-05-15 Soumen De Karmakar , Thomas Speck

Entanglement, which quantifies non-local correlations in quantum mechanics, is the fascinating concept behind much of aspiration towards quantum technologies. Nevertheless, directly measuring the entanglement of a many-particle system is…

Disordered Systems and Neural Networks · Physics 2019-01-02 Richard Berkovits

Reconstructing gene regulatory networks from large-scale heterogeneous data is a key challenge in biology. In multi-omics data analysis, networks based on pairwise statistical association measures remain popular, as they are easy to build…

Methodology · Statistics 2025-06-11 Ekaterina Tomilina , Florence Jaffrézic , Gildas Mazo

Future quantum technologies such as quantum communication, quantum sensing, and distributed quantum computation, will rely on networks of shared entanglement between spatially separated nodes. In this work, we provide improved…

Quantum Physics · Physics 2024-04-02 Stav Haldar , Pratik J. Barge , Sumeet Khatri , Hwang Lee

Conformation-dependent design of polymer sequences can be considered as a tool to control macromolecular self-assembly. We consider the monomer unit sequences created via the modification of polymers in a homogeneous melt in accordance with…

Soft Condensed Matter · Physics 2021-07-07 Elena N. Govorun , Ruslan M. Shupanov , Sophia A. Pavlenko , Alexei R. Khokhlov

Simultaneous recordings from many neurons hide important information and the connections characterizing the network remain generally undiscovered despite the progresses of statistical and machine learning techniques. Discerning the presence…

Applications · Statistics 2019-03-21 Pietro Verzelli , Laura Sacerdote

We present a data analysis pipeline for CMB polarization experiments, running from multi-frequency maps to the power spectra. We focus mainly on component separation and, for the first time, we work out the covariance matrix accounting for…

Cosmology and Nongalactic Astrophysics · Physics 2010-06-14 S. Ricciardi , A. Bonaldi , P. Natoli , G. Polenta , C. Baccigalupi , E. Salerno , K. Kayabol , L. Bedini , G. De Zotti

We present a real-space method for computing the random phase approximation (RPA) correlation energy within Kohn-Sham density functional theory, leveraging the low-rank nature of the frequency-dependent density response operator. In…

Computational Physics · Physics 2025-04-03 Boqin Zhang , Shikhar Shah , John E. Pask , Edmond Chow , Phanish Suryanarayana

We introduce an entropic network model for copolymer elastomers based on the evolution of microscopic chain conformations during deformation. We show that the stress results from additive contributions due to chain stretch at the global as…

Soft Condensed Matter · Physics 2018-07-17 Amanda J. Parker , Joerg Rottler

Extensive molecular simulations are applied to characterize the equilibrium dynamics, entanglement topology, and nonlinear extensional rheology of symmetric ring-linear polymer blends with systematically varied ring fraction $\phi_R$.…

Soft Condensed Matter · Physics 2021-12-15 Thomas C. O'Connor , Ting Ge , Gary S. Grest

The non-linear stress-strain relation for crosslinked polymer networks is studied using molecular dynamics simulations. Previously we demonstrated the importance of trapped entanglements in determining the elastic and relaxational…

Soft Condensed Matter · Physics 2009-10-31 Gary S. Grest , Mathias Puetz , Kurt Kremer , Ralf Everaers

We simulate the assembly of DNA copolymers from two types of short duplexes (short double strands with a single-stranded overhang at each end), as described by the oxDNA model. We find that the statistics of chain lengths can be well…

Soft Condensed Matter · Physics 2021-11-09 R. Foffi , F. Sciortino , J. M. Tavares , P. I. C. Teixeira

The diffusion of molecules (penetrants) of variable size, shape, and chemistry through dense crosslinked polymer networks is a fundamental scientific problem that is broadly relevant in materials, polymer, physical and biological chemistry.…