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Biological living materials, such as animal bones and plant stems, are able to self-heal, regenerate, adapt and make decisions under environmental pressures. Despite recent successful efforts to imbue synthetic materials with some of these…

Geometric frustration is recognized to generate complex morphologies in self-assembling particulate and molecular systems. In bulk states, frustrated drives structured arrays of topological defects. In the dilute limit, these systems have…

Soft Condensed Matter · Physics 2025-09-01 Nicholas Hackney , Gregory Grason

We numerically investigate the long-time behavior of the density-density auto-correlation function in driven lattice gases with particle exclusion and periodic boundary conditions in one, two, and three dimensions using precise Monte Carlo…

Statistical Mechanics · Physics 2011-05-06 George L. Daquila , Uwe C. Tauber

In the work, a modified effective medium theory is constructed for calculating the effective properties of thermoelectric composites with different values of percolation thresholds. It is shown that even at concentrations beyond the…

Materials Science · Physics 2020-06-23 Snarskii Andrei , Yuskevich Pavel

We present a simulation workflow for efficient investigations of the interplay between 3D lithium-ion electrode microstructures and electrochemical performance, with emphasis on lithium plating. Our approach addresses several challenges.…

Since its foundations, more than one hundred years ago, the field of structural biology has strived to understand and analyze the properties of molecules and their interactions by studying the structure that they take in 3D space. However,…

Biomolecules · Quantitative Biology 2023-02-27 Gabriele Corso

Autonomic interfacial self-healing in elastomers enables their reprocessing and recycling, making them valuable for applications such as ballistic resistance, surface coatings, adhesives, and biomedical materials. This article prescribes a…

Materials Science · Physics 2025-03-25 Sanhita Das , Nivedita Kumari

Micro-scale cilia play a vital role in mucociliary clearance (MCC) in the human respiratory airways. In this numerical study, we examine fluid transport driven by the active beating of a single filament immersed in a three-dimensional…

Fluid Dynamics · Physics 2026-02-02 Qian Mao , Umberto d'Ortona , Julien Favier

The motion of a eukaryotic cell presents a variety of interesting and challenging problems from both a modeling and a computational perspective. The processes span many spatial scales (from molecular to tissue) as well as disparate time…

Cell Behavior · Quantitative Biology 2010-11-25 Ben Vanderlei , James J. Feng , Leah Edelstein-Keshet

We study by means of Monte Carlo simulations the off equilibrium properties of a model glass, the Frustrated Ising Lattice Gas (FILG) in three dimensions. We have computed typical two times quantities, like density-density autocorrelations…

Disordered Systems and Neural Networks · Physics 2009-10-31 Daniel A. Stariolo , Jeferson J. Arenzon

The task of learning patterns is typically associated with systems that update parameters on fixed architectures, such as neural networks, where learning proceeds through continuous optimization. Here, we demonstrate that pattern learning…

Disordered Systems and Neural Networks · Physics 2026-04-29 Shabeeb Ameen , Tao Zhang , J. M. Schwarz

When conducting bonds are occupied randomly in a two-dimensional square lattice, the conductivity of the system increases continuously as the density of those conducting bonds exceeds the percolation threshold. Such a behavior is well known…

Statistical Mechanics · Physics 2014-11-03 Seongmin Kim , Y. S. Cho , N. A. M. Araujo , B. Kahng

The combined processes of anodization and electrodeposition lead to highly ordered arrays of cylindrical nanowires. This template-based self-assembly fabrication method yields nanowires embedded in alumina. Commonly, chemical etching is…

Materials Science · Physics 2009-11-13 J. L. Silverberg

We report an approach to fully visualize the flow of two immiscible fluids through a model three-dimensional (3D) porous medium at pore-scale resolution. Using confocal microscopy, we directly image the drainage of the medium by the…

Fluid Dynamics · Physics 2013-01-22 Amber T. Krummel , Sujit S. Datta , Stefan Münster , David A. Weitz

We investigate the spread of correlations carried by an excitation in a 1-dimensional lattice system with high on-site energy disorder and long-range couplings with a power-law dependence on the distance ($\propto r^{-\mu}$). The increase…

Disordered Systems and Neural Networks · Physics 2022-06-01 Karol Kawa , Paweł Machnikowski

We conduct a molecular dynamics simulation of an inelastic gas system utilizing an event-driven algorithm combined with a thermostat mechanism. Initially, the kinetic energy of the system experiences a decay before settling into a…

Computational Physics · Physics 2025-02-03 Rameez Farooq Shah , Shikha Kumari , Syed Rashid Ahmad

A novel approach is presented to efficiently include transport effects in thin active material coating layers of all-solid-state batteries using a dimensionally reduced formulation embedded into a three-dimensionally resolved coupled…

Chemical Physics · Physics 2023-07-06 Stephan Sinzig , Christoph P. Schmidt , Wolfgang A. Wall

Tracking of plant cells in images obtained by microscope is a challenging problem due to biological phenomena such as large number of cells, non-uniform growth of different layers of the tightly packed plant cells and cell division.…

Computer Vision and Pattern Recognition · Computer Science 2023-09-22 Md Shazid Islam , Arindam Dutta , Calvin-Khang Ta , Kevin Rodriguez , Christian Michael , Mark Alber , G. Venugopala Reddy , Amit K. Roy-Chowdhury

Three-dimensional (3D) medical images, such as Computed Tomography (CT) and Magnetic Resonance Imaging (MRI), are essential for clinical applications. However, the need for diverse and comprehensive representations is particularly…

Computer Vision and Pattern Recognition · Computer Science 2025-05-26 Siwen Wang , Churan Wang , Fei Gao , Lixian Su , Fandong Zhang , Yizhou Wang , Yizhou Yu

We simulate the electrical response of multiple disjoint biological 3D cells undergoing an electropermeabilization process. Instead of solving the boundary value problem in the unbounded volume, we reduce it to a system of boundary…

Computational Engineering, Finance, and Science · Computer Science 2024-09-04 Isabel A. Martínez Ávila , Carlos Jerez-Hanckes , Irina Pettersson