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The Poisson-Boltzmann equation offers an efficient way to study electrostatics in molecular settings. Its numerical solution with the boundary element method is widely used, as the complicated molecular surface is accurately represented by…

Numerical Analysis · Mathematics 2021-08-25 Stefan D. Search , Christopher D. Cooper , Elwin van't Wout

We consider boundary element methods where the Calder\'on projector is used for the system matrix and boundary conditions are weakly imposed using a particular variational boundary operator designed using techniques from augmented…

Numerical Analysis · Mathematics 2023-05-15 Timo Betcke , Erik Burman , Matthew W. Scroggs

The Vlasov-Poisson-Boltzmann equation is a classical equation governing the dynamics of charged particles with the electric force being self-imposed. We consider the system in a convex domain with the Cercignani-Lampis boundary condition.…

Analysis of PDEs · Mathematics 2021-04-07 Hongxu Chen , Chanwoo Kim , Qin Li

We argue that one can associate a pseudo-time with sequences of configurations generated in the course of classical Monte Carlo simulations for a single-minimum bound state, if the sampling is optimal. Hereby the sampling rates can be,…

Statistical Mechanics · Physics 2023-05-29 Yang He , Vassiliy Lubchenko

We present a rigorous efficient event-chain Monte Carlo algorithm for long-range interacting particle systems. Using a cell-veto scheme within the factorized Metropolis algorithm, we compute each single-particle move with a fixed number of…

Statistical Mechanics · Physics 2016-09-28 Sebastian C. Kapfer , Werner Krauth

Various physical models can be expressed in terms of matrices. A valuable tool for analysing matrix models is numerical simulations, often the Metropolis algorithm with various improvements. The downside of this approach is that the…

High Energy Physics - Lattice · Physics 2026-05-29 Samuel Kováčik , Matej Hrmo

We study a two-dimensional system of dipolar hard disks in the presence of a uniform external electric field $\boldsymbol{\mathcal{E}} $ by Monte Carlo simulations in a square with periodic boundary conditions. The study is performed in…

Soft Condensed Matter · Physics 2016-09-21 Jean-Michel Caillol , Dominique Levesque , Jean-Jacques Weis

We find the spectrum of boundary bound states for the sine-Gordon model with Dirichlet boundary conditions, closing the bootstrap and providing a complete description of all the poles in the boundary reflection factors. The boundary…

High Energy Physics - Theory · Physics 2008-11-26 Peter Mattsson , Patrick Dorey

We study the influence of boundary conditions on stationary, periodic patterns in one-dimensional systems. We show how a conceptual understanding of the structure of equilibria in large domains can be based on the characterization of…

Analysis of PDEs · Mathematics 2015-03-26 David Morrissey , Arnd Scheel

We continue the line of work initiated by Goldreich and Ron (Journal of the ACM, 2017) on testing dynamic environments and propose to pursue a systematic study of the complexity of testing basic dynamic environments and local rules. As a…

Data Structures and Algorithms · Computer Science 2021-05-05 Yonatan Nakar , Dana Ron

Recently, Velazquez and Curilef have proposed a methodology to extend Monte Carlo algorithms based on canonical ensemble, which is aimed to overcome slow sampling problems associated with temperature-driven discontinuous phase transitions.…

Statistical Mechanics · Physics 2013-07-31 L. Velazquez , J. C. Castro-Palacio

In this paper, we propose to use the eikonal equation as a boundary condition when advective or normal flow equations in the level set formulation are solved numerically on polyhedral meshes in the three-dimensional domain. Since the level…

Numerical Analysis · Mathematics 2025-04-09 Jooyoung Hahn , Karol Mikula , Peter Frolkovič

We present a constructive method to devise boundary conditions for solutions of second-order elliptic equations so that these solutions satisfy specific qualitative properties such as: (i) the norm of the gradient of one solution is bounded…

Analysis of PDEs · Mathematics 2012-10-16 Guillaume Bal , Matias Courdurier

We study nonlocal Dirichlet energies associated with a class of nonlocal diffusion models on a bounded domain subject to the conventional local Dirichlet boundary condition. The goal of this paper is to give a general framework to correctly…

Analysis of PDEs · Mathematics 2024-09-30 Weiye Gan , Qiang Du , Zuoqiang Shi

The study of undersea cables and mooring lines statics remains an unavoidable subject of simulation in offshore field for either steady-state analysis or dynamic simulation initialization. Whether the study concerns mooring systems pinned…

Computational Engineering, Finance, and Science · Computer Science 2025-02-06 Florian Surmont , Damien Coache

We propose a local, O(N) molecular dynamics algorithm for the simulation of charged systems. The long ranged Coulomb potential is generated by a propagating electric field that obeys modified Maxwell equations. On coupling the…

Soft Condensed Matter · Physics 2009-11-10 Jörg Rottler , A. C. Maggs

We review the local Monte Carlo dynamics and Swendsen-Wang cluster algorithm. We introduce and analyze a new Monte Carlo dynamics known as transitional Monte Carlo. The transitional Monte Carlo algorithm samples energy probability…

Statistical Mechanics · Physics 2007-05-23 Jian-Sheng Wang

We present a novel Monte Carlo algorithm which enhances equilibrization of low-temperature simulations and allows sampling of configurations over a large range of energies. The method is based on a non-Boltzmann probability weight factor…

Condensed Matter · Physics 2009-10-30 Ulrich H. E. Hansmann , Yuko Okamoto

The properties of two-state nearest-neighbour cellular automata (CA) that are capable of density classification are discussed. It is shown that these CA actually conserve the total density, rather than merely classifying it. This is also…

comp-gas · Physics 2007-05-23 N. Sukumar

Systems with conserved dipole moment have drawn considerable interest in light of their realization in recent experiments on tilted optical lattices. An important question for such systems is delineating the conditions under which they…

Strongly Correlated Electrons · Physics 2024-09-19 Fiona J. Burnell , Sanjay Moudgalya , Abhinav Prem