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We present encube $-$ a qualitative, quantitative and comparative visualisation and analysis system, with application to high-resolution, immersive three-dimensional environments and desktop displays. encube extends previous comparative…

Apache Spark is a Big Data framework for working on large distributed datasets. Although widely used in the industry, it remains rather limited in the academic community or often restricted to software engineers. The goal of this paper is…

Instrumentation and Methods for Astrophysics · Physics 2019-07-17 S. Plaszczynski , J. Peloton , C. Arnault , J. E. Campagne

In recent years development in the area of Single Board Computing has been advancing rapidly. At Wolters Kluwer's Corporate Legal Services Division a prototyping effort was undertaken to establish the utility of such devices for practical…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-01-07 James J. Cusick , William Miller , Nicholas Laurita , Tasha Pitt

PaPy, which stands for parallel pipelines in Python, is a highly flexible framework that enables the construction of robust, scalable workflows for either generating or processing voluminous datasets. A workflow is created from user-written…

Programming Languages · Computer Science 2014-07-17 Marcin Cieslik , Cameron Mura

Bioinformatics research is characterized by voluminous and incremental datasets and complex data analytics methods. The machine learning methods used in bioinformatics are iterative and parallel. These methods can be scaled to handle big…

Computational Engineering, Finance, and Science · Computer Science 2015-06-17 Hirak Kashyap , Hasin Afzal Ahmed , Nazrul Hoque , Swarup Roy , Dhruba Kumar Bhattacharyya

Task-based execution frameworks, such as parallel programming libraries, computational workflow systems, and function-as-a-service platforms, enable the composition of distinct tasks into a single, unified application designed to achieve a…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-15 J. Gregory Pauloski , Valerie Hayot-Sasson , Maxime Gonthier , Nathaniel Hudson , Haochen Pan , Sicheng Zhou , Ian Foster , Kyle Chard

Subgraph counting the task of determining the number of instances of a query pattern within a large graph lies at the heart of many critical applications, from analyzing financial networks and transportation systems to understanding…

Data Structures and Algorithms · Computer Science 2025-04-16 Mohammad Matin Najafi , Xianju Zhu , Chrysanthi Kosyfaki , Laks V. S. Lakshmanan , Reynold Cheng

We present an approach for integrating the time evolution of quantum systems. We leverage the computation power of graphics processing units (GPUs) to perform the integration of all time steps in parallel. The performance boost is…

Numerical Analysis · Mathematics 2021-10-06 Konstantin Herb , Pol Welter

Computer-aided breast cancer diagnosis in mammography is a challenging problem, stemming from mammographical data scarcity and data entanglement. In particular, data scarcity is attributed to the privacy and expensive annotation. And data…

Computer Vision and Pattern Recognition · Computer Science 2021-01-01 Heyi Li , Dongdong Chen , William H. Nailon , Mike E. Davies , David Laurenson

The field of remote sensing is nowadays faced with huge amounts of data. While this offers a variety of exciting research opportunities, it also yields significant challenges regarding both computation time and space requirements. In…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-06 Malte von Mehren , Fabian Gieseke , Jan Verbesselt , Sabina Rosca , Stéphanie Horion , Achim Zeileis

Today, very large amounts of data are produced and stored in all branches of society including science. Mining these data meaningfully has become a considerable challenge and is of the broadest possible interest. The size, both in numbers…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-11 Andreas Vitalis

We present the Quantum Hamiltonian Analysis Toolkit (QHAT), a newly developed application that provides a user-friendly interface for studying Hamiltonians and performing Hamiltonian simulation on fault-tolerant quantum computers. QHAT…

We present a user-friendly, but powerful interface for the data mining of scientific repositories. We present the tool in use with actual astronomy data and show how it may be used to achieve many different types of powerful semantic…

Instrumentation and Methods for Astrophysics · Physics 2015-02-24 Brian Thomas , Edward Shaya

We are in the era of the Big Data. In Astronomy and Astrophysics, the massive amounts of data generated are, as of today, in the Peta-scale if not already in the Exa-scale. In the near future, we will see the data collected size and…

Instrumentation and Methods for Astrophysics · Physics 2023-02-23 S. Bertocco

This paper provides a brief introduction of the mathematical theory behind the time series unfolding method. The algorithms presented serve as a valuable mathematical and analytical tool for analyzing data collected from brain-computer…

Neurons and Cognition · Quantitative Biology 2024-10-17 Alexandra Bernadotte , Victor Buchstaber

Human-computer interaction relies on mouse/touchpad, keyboard, and screen, but tools have recently been developed that engage sound, smell, touch, muscular resistance, voice dialogue, balance, and multiple senses at once. How might these…

Human-Computer Interaction · Computer Science 2022-04-26 Gwynn Sturdevant , A. Jonathan R. Godfrey , Andrew Gelman

Bayesian networks (BNs) are attractive, because they are graphical and interpretable machine learning models. However, exact inference on BNs is time-consuming, especially for complex problems. To improve the efficiency, we propose a fast…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-14 Jiantong Jiang , Zeyi Wen , Atif Mansoor , Ajmal Mian

Binary analysis is a core component of many critical security tasks, including reverse engineering, malware analysis, and vulnerability detection. Manual analysis is often time-consuming, but identifying commonly-used or previously-seen…

Machine Learning · Computer Science 2024-10-31 Rebecca Saul , Chang Liu , Noah Fleischmann , Richard Zak , Kristopher Micinski , Edward Raff , James Holt

The way in which data are shared can affect their utility and reusability. Here, we demonstrate how data that we had previously shared in bulk can be mobilized further through a knowledge graph that allows for much more granular exploration…

Computational Engineering, Finance, and Science · Computer Science 2025-01-07 Sheeba Samuel , Daniel Mietchen

Dalek is an experimental compute cluster designed to evaluate the performance of heterogeneous, consumer-grade hardware for software design, prototyping, and algorithm development. In contrast to traditional computing centers that rely on…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-15 Adrien Cassagne , Noé Amiot , Manuel Bouyer