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Diverse biological networks exhibit universal features distinguished from those of random networks, calling much attention to their origins and implications. Here we propose a minimal evolution model of Boolean regulatory networks, which…

Molecular Networks · Quantitative Biology 2014-11-26 Deok-Sun Lee

A detailed analysis of three species-rich ecosystem food webs has shown that they display scale-free distributions of connections. Such graphs of interaction are in fact shared by a number of biological and technological networks, which…

Disordered Systems and Neural Networks · Physics 2007-05-23 Ricard V. Sole Jose M. Montoya

Temporal social networks of human interactions are preponderant in understanding the fundamental patterns of human behavior. In these networks, interactions occur locally between individuals (i.e., nodes) who connect with each other at…

Physics and Society · Physics 2022-10-11 Shaunette T. Ferguson , Teruyoshi Kobayashi

Structure entails function and thus a structural description of the brain will help to understand its function and may provide insights into many properties of brain systems, from their robustness and recovery from damage, to their dynamics…

Neurons and Cognition · Quantitative Biology 2008-08-27 Marcus Kaiser , Robert Martin , Peter Andras , Malcolm P. Young

Failure, damage spread and recovery crucially underlie many spatially embedded networked systems ranging from transportation structures to the human body. Here we study the interplay between spontaneous damage, induced failure and recovery…

Physics and Society · Physics 2017-10-23 Lucas Böttcher , Mirko Lukovic , Jan Nagler , Shlomo Havlin , Hans J. Herrmann

How does connectivity impact network dynamics? We address this question by linking network characteristics on two scales. On the global scale we consider the coherence of overall network dynamics. We show that such \emph{global coherence}…

Neurons and Cognition · Quantitative Biology 2013-12-13 Yu Hu , James Trousdale , Krešimir Josić , Eric Shea-Brown

We study the dynamical behaviour of the collective field of chaotic systems on small world lattices. Coupled neuronal systems as well as coupled logistic maps are investigated. We observe that significant changes in dynamical properties…

Chaotic Dynamics · Physics 2007-05-23 Prashant M. Gade , Sudeshna Sinha

Feedback loops in a dynamic network play an important role in determining the dynamics of that network. Through a computational study, in this paper we show that networks with fewer independent negative feedback loops tend to exhibit more…

Quantitative Methods · Quantitative Biology 2009-11-13 Eduardo Sontag , Alan Veliz-Cuba , Reinhard Laubenbacher , Abdul Salam Jarrah

We review selected results related to robustness of networked systems in finite and asymptotically large size regimes, under static and dynamical settings. In the static setting, within the framework of flow over finite networks, we discuss…

Systems and Control · Electrical Eng. & Systems 2019-09-17 Ketan Savla , Jeff S. Shamma , Munther A. Dahleh

The combination of the compactness of networks, featuring small diameters, and their complex architectures results in a variety of critical effects dramatically different from those in cooperative systems on lattices. In the last few years,…

Statistical Mechanics · Physics 2009-11-13 S. N. Dorogovtsev , A. V. Goltsev , J. F. F. Mendes

For years, we have been building models of gene regulatory networks, where recent advances in molecular biology shed some light on new structural and dynamical properties of such highly complex systems. In this work, we propose a novel…

Adaptation and Self-Organizing Systems · Physics 2009-09-30 Christian Darabos , Marco Tomassini , Mario Giacobini

The organizational development of growing random networks is investigated. These growing networks are built by adding nodes successively and linking each to an earlier node of degree k with attachment probability A_k. When A_k grows slower…

Statistical Mechanics · Physics 2009-10-31 P. L. Krapivsky , S. Redner

We introduce economic models based on Boolean Delay Equations: this formalism makes easier to take into account the complexity of the interactions between firms and is particularly appropriate for studying the propagation of an initial…

General Finance · Quantitative Finance 2016-05-06 B. Coluzzi , M. Ghil , S. Hallegatte , G. Weisbuch

We construct and investigate Boolean networks that follow a given reliable trajectory in state space, which is insensitive to fluctuations in the updating schedule, and which is also robust against noise. Robustness is quantified as the…

Biological Physics · Physics 2010-12-02 Christoph Schmal , Tiago P. Peixoto , Barbara Drossel

We propose new activity-dependent adaptive Boolean networks inspired by the cis-regulatory mechanism in gene regulatory networks. We analytically show that our model can be solved for stationary in-degree distribution for a wide class of…

Adaptation and Self-Organizing Systems · Physics 2017-12-08 Taichi Haruna

Many growing networks possess accelerating statistics where the number of links added with each new node is an increasing function of network size so the total number of links increases faster than linearly with network size. In particular,…

Molecular Networks · Quantitative Biology 2017-12-22 M. J. Gagen , J. S. Mattick

Recently, it has been proposed that the natural connectivity can be used to efficiently characterise the robustness of complex networks. Natural connectivity quantifies the redundancy of alternative routes in a network by evaluating the…

Statistical Mechanics · Physics 2010-09-20 Jun Wu , Mauricio Barahona , Yuejin Tan , Hongzhong Deng

The lack of studying the complex organization of directed network usually limits to the understanding of underlying relationship between network structures and functions. Structural controllability and structural predictability, two…

Physics and Society · Physics 2022-03-31 Fei Jing , Chuang Liu , Jian-Liang Wu , Zi-Ke Zhang

One of the most central questions in network science is: which nodes are most important? Often this question is answered using structural properties such as high connectedness or centrality in the network. However, static structural…

Physics and Society · Physics 2021-07-02 Casper van Elteren , Rick Quax , Peter Sloot

Boolean networks have been proposed as potentially useful models for genetic control. An important aspect of these networks is the stability of their dynamics in response to small perturbations. Previous approaches to stability have assumed…

Molecular Networks · Quantitative Biology 2015-05-13 Andrew Pomerance , Edward Ott , Michelle Girvan , Wolfgang Losert