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Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…

Populations and Evolution · Quantitative Biology 2018-09-05 Joan Carles Pons , Charles Semple , Mike Steel

Complex networks describe a wide range of systems in nature and society. Frequently cited examples include Internet, WWW, a network of chemicals linked by chemical reactions, social relationship networks, citation networks, etc. The…

Physics and Society · Physics 2013-02-26 James Kim

Investigation of divisibility properties of natural numbers is one of the most important themes in the theory of numbers. Various tools have been developed over the centuries to discover and study the various patterns in the sequence of…

Social and Information Networks · Computer Science 2015-12-03 Snehal M. Shekatkar , Chandrasheel Bhagwat , G. Ambika

When presented with information of any type, from music to language to mathematics, the human mind subconsciously arranges it into a network. A network puts pieces of information like musical notes, syllables or mathematical concepts into…

Neurons and Cognition · Quantitative Biology 2020-09-10 Sophia U. David , Sophie E. Loman , Christopher W. Lynn , Ann S. Blevins , Danielle S. Bassett

The key to the text classification task is language representation and important information extraction, and there are many related studies. In recent years, the research on graph neural network (GNN) in text classification has gradually…

Computation and Language · Computer Science 2022-09-16 Shuai Hua , Xinxin Li , Yunpeng Jing , Qunfeng Liu

A contraction sequence of a graph consists of iteratively merging two of its vertices until only one vertex remains. The recently introduced twin-width graph invariant is based on contraction sequences. More precisely, if one puts red edges…

Data Structures and Algorithms · Computer Science 2022-06-02 Édouard Bonnet , Eun Jung Kim , Amadeus Reinald , Stéphan Thomassé

Small-world networks are ubiquitous in real-life systems. Most previous models of small-world networks are stochastic. The randomness makes it more difficult to gain a visual understanding on how do different nodes of networks interact with…

Statistical Mechanics · Physics 2007-05-23 Zhongzhi Zhang , Lili Rong , Chonghui Guo

We analyze the threshold network model in which a pair of vertices with random weights are connected by an edge when the summation of the weights exceeds a threshold. We prove some convergence theorems and central limit theorems on the…

Probability · Mathematics 2007-05-23 Norio Konno , Naoki Masuda , Rahul Roy , Anish Sarkar

Datasets from several domains, such as life-sciences, semantic web, machine learning, natural language processing, etc. are naturally structured as acyclic graphs. These datasets, particularly those in bio-informatics and computational…

Discrete Mathematics · Computer Science 2014-09-02 Sandeep Gupta

We present a network model in which words over a specific alphabet, called {\it structures}, are associated to each node and undirected edges are added depending on some distance between different structures. It is shown that this model can…

Social and Information Networks · Computer Science 2015-05-20 P. Frisco

This paper presents preliminary results of Croatian syllable networks analysis. Syllable network is a network in which nodes are syllables and links between them are constructed according to their connections within words. In this paper we…

Computation and Language · Computer Science 2014-07-18 Kristina Ban , Ana Meštrović , Sanda Martinčić-Ipšić

Sequential activation of neurons is a common feature of network activity during a variety of behaviors, including working memory and decision making. Previous network models for sequences and memory emphasized specialized architectures in…

Neurons and Cognition · Quantitative Biology 2016-03-16 Kanaka Rajan , Christopher D Harvey , David W Tank

Interpreting natural language is an increasingly important task in computer algorithms due to the growing availability of unstructured textual data. Natural Language Processing (NLP) applications rely on semantic networks for structured…

Computation and Language · Computer Science 2023-08-21 Gabriel Budel , Ying Jin , Piet Van Mieghem , Maksim Kitsak

Small-world networks by Watts and Strogatz are a class of networks that are highly clustered, like regular lattices, yet have small characteristic path lengths, like random graphs. These characteristics result in networks with unique…

Adaptation and Self-Organizing Systems · Physics 2011-09-27 Qawi K. Telesford , Karen E. Joyce , Satoru Hayasaka , Jonathan H. Burdette , Paul J. Laurienti

Boolean networks have been used in a variety of settings, as models for general complex systems as well as models of specific systems in diverse fields, such as biology, engineering, and computer science. Traditionally, their properties as…

Dynamical Systems · Mathematics 2024-02-02 Matthew Wheeler , Claus Kadelka , Alan Veliz-Cuba , David Murrugarra , Reinhard Laubenbacher

Tensor networks provide extremely powerful tools for the study of complex classical and quantum many-body problems. Over the last two decades, the increment in the number of techniques and applications has been relentless, and especially…

Quantum Physics · Physics 2023-03-29 Mari Carmen Bañuls

We introduce a growing network model in which a new node attaches to a randomly-selected node, as well as to all ancestors of the target node. This mechanism produces a sparse, ultra-small network where the average node degree grows…

Statistical Mechanics · Physics 2009-11-10 P. L. Krapivsky , S. Redner

In this paper, we explore complex network properties of word collocation networks (Ferret, 2002) from four different genres. Each document of a particular genre was converted into a network of words with word collocations as edges. We…

Social and Information Networks · Computer Science 2014-03-07 Shibamouli Lahiri

Gated networks are networks that contain gating connections, in which the outputs of at least two neurons are multiplied. Initially, gated networks were used to learn relationships between two input sources, such as pixels from two images.…

Machine Learning · Computer Science 2015-12-11 Olivier Sigaud , Clément Masson , David Filliat , Freek Stulp

This work attempts to explain the types of computation that neural networks can perform by relating them to automata. We first define what it means for a real-time network with bounded precision to accept a language. A measure of network…

Computation and Language · Computer Science 2021-01-06 William Merrill