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Structural classification shows that the number of different protein folds is surprisingly small. It also appears that proteins are built in a modular fashion, from a relatively small number of components. Here we propose to identify the…

Biological Physics · Physics 2015-05-30 Andrei Krokhotin , Antti J. Niemi , Xubiao Peng

Solitons play a fundamental role in dynamics of nonlinear excitations. Here we explore the motion of solitons in one-dimensional uniform Bose-Einstein condensates subjected to a spin-orbit coupling (SOC). We demonstrate that the spin…

Quantum Gases · Physics 2016-12-21 Lin Wen , Q. Sun , Yu Chen , Deng-Shan Wang , J. Hu , H. Chen , W. -M. Liu , G. Juzeliūnas , Boris A. Malomed , An-Chun Ji

In this paper we examine the excitations observable in atoms confined in an optical lattice around the superfluid-insulator transition. We use increases in the number variance of atoms, subsequent to tilting the lattice as the primary…

Soft Condensed Matter · Physics 2013-05-29 K. Braun-Munzinger , J. A. Dunningham , K. Burnett

A unified formulation that obtains solitary waves for various background densities in the Bose-Einstein condensate of a system of hard-core bosons with nearest neighbor attractive interactions is presented. In general, two species of…

Quantum Gases · Physics 2023-07-19 Radha Balakrishnan , Indubala I Satija

We study the dynamics of a dark-bright soliton interacting with a fixed impurity using a mean-field approach. The system is described by a vector nonlinear Schrodinger equation (NLSE) appropriate to multicomponent Bose-Einstein condensates.…

Quantum Gases · Physics 2019-09-04 Majed O. D. Alotaibi , Lincoln D. Carr

Solitons confined in channels are studied in the two-dimensional nonlinear Schr\"odinger equation. We study the dynamics of two channel-guided solitons near the junction where two channels are merged. The two solitons merge into one…

Pattern Formation and Solitons · Physics 2015-06-04 Yusuke Kageyama , Hidetsugu Sakaguchi

We present a brief overview of the basic concepts of the soliton stability theory and discuss some characteristic examples of the instability-induced soliton dynamics, in application to spatial optical solitons described by the NLS-type…

Pattern Formation and Solitons · Physics 2018-04-23 Yuri S. Kivshar , Andrey A. Sukhorukov

The dynamics of soliton pulses in the Nonlinear Schrodinger Equation (NLSE) driven by an external Traveling wave is studied analytically and numerically. The Hamiltonian structure of the system is used to show that, in the adiabatic…

patt-sol · Physics 2009-10-31 Gil Cohen

We show how to generate robust self-sustained clusters of soliton bullets-spatiotemporal (optical or matter-wave) solitons. The clusters carry an orbital angular momentum being supported by competing nonlinearities. The "atoms" forming the…

We develop a general classification of the infinite number of families of solitons and soliton complexes in the one-dimensional Gross-Pitaevskii/nonlinear Schrodinger equation with a nonlinear lattice pseudopotential, i.e., periodically…

Pattern Formation and Solitons · Physics 2016-08-03 M. E. Lebedev , G. L. Alfimov , Boris A. Malomed

The nonlinear Schroedinger equation with a third-order dispersive term is considered. Infinite families of embedded solitons, parameterized by the propagation velocity, are found through a gauge transformation. By applying this…

Pattern Formation and Solitons · Physics 2007-05-23 Jianke Yang , Triantaphyllos R. Akylas

The Nonlinear Schr\"odinger (NLS) equation is widely used in everywhere of natural science. Various nonlinear excitations of the NLS equation have been found by many methods. However, except for the soliton-soliton interactions, it is very…

Exactly Solvable and Integrable Systems · Physics 2013-07-16 S. Y. Lou , Xue-Ping Cheng , Xiao-Yan Tang

Nonlinearity in the Schr\"odinger equation gives rise to rich phenomena such as soliton formation, modulational instability, and self-organization in diverse physical systems. Motivated by recent advances in engineering nonlinear gauge…

Pattern Formation and Solitons · Physics 2025-09-24 Harvey Cao , Daniel Leykam

The soliton structure of a gauge theory proposed to describe chiral excitations in the multi-Layer Fractional Quantum Hall Effect is investigated. A new type of derivative multi-component nonlinear Schr\"{o}dinger equation emerges as…

High Energy Physics - Theory · Physics 2007-05-23 Masato Hisakado

We consider a one-dimensional oscillatory medium with a coupling through a diffusive linear field. In the limit of fast diffusion this setup reduces to the classical Kuramoto-Battogtokh model. We demonstrate that for a finite diffusion…

Pattern Formation and Solitons · Physics 2022-05-11 L. A. Smirnov , M. I. Bolotov , D. I. Bolotov , G. V. Osipov , A. Pikovsky

Using numerical modeling investigated interaction of solitary waves (solitons) of the regularized long wave equation. For reception the stable model of the nonlinear medium are used methods of the linear prediction and progressive…

Pattern Formation and Solitons · Physics 2007-05-23 Yu. A. Bunyak

A model for soliton dynamics on a hydrogen-bond network in helical proteins is proposed. It employs in three dimensions the formalism of fully integrable Toda lattices which admits phonons as well as solitons along the hydrogen-bonds of the…

Condensed Matter · Physics 2009-11-07 Francesco d'Ovidio , Henrik Bohr , Per-Anker Lindgaard

We identify that for a broad range of parameters a variant of the soliton solution of the one-dimensional non-linear Schr\"{odinger} equation, the {\it breather}, is distinct when one studies the associated space curve (or soliton surface),…

Pattern Formation and Solitons · Physics 2017-11-10 Rahul O. R. , S. Murugesh

The dynamics of Bose-Einstein condensates trapped in a deep optical lattice is governed by a discrete nonlinear equation (DNL). Its degree of nonlinearity and the intersite hopping rates are retrieved from a nonlinear tight-binding…

Condensed Matter · Physics 2009-11-10 Augusto Smerzi , Andrea Trombettoni

Solitons are commonly known as waves that propagate without dispersion. Here we show that they can occur for driven overdamped Brownian dynamics of hard spheres in periodic potentials at high densities. The solitons manifest themselves as…

Statistical Mechanics · Physics 2022-08-25 Alexander P. Antonov , Artem Ryabov , Philipp Maass
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