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Rooted trees with probabilities are used to analyze properties of a variable length code. A bound is derived on the difference between the entropy rates of the code and a memoryless source. The bound is in terms of normalized informational…

Information Theory · Computer Science 2013-10-11 Georg Böcherer , Rana Ali Amjad

Recently Yoffe {\it et al.} observed that the average distances between $5'-3'$ ends of RNA molecules are very small and largely independent of sequence length. This observation is based on numerical computations as well as theoretical…

Combinatorics · Mathematics 2012-01-04 Hillary S. W. Han , Christian M. Reidys

Consider the network of all secondary structures of a given RNA sequence, where nodes are connected when the corresponding structures have base pair distance one. The expected degree of the network is the average number of neighbors, where…

Biomolecules · Quantitative Biology 2014-11-04 Peter Clote

We explicitly calculate the distance dependent correlation functions in a maximal entropy ensemble of random trees. We show that correlations remain disassortative at all distances and vanish only as a second inverse power of the distance.…

Statistical Mechanics · Physics 2010-05-04 Piotr Bialas , Andrzej K. Oleś

We propose a generalized model for uniform recursive tree (URT) by introducing an imperfect growth process, which may generate disconnected components (clusters). The model undergoes an interesting phase transition from a singly connected…

Statistical Mechanics · Physics 2008-04-18 Zhongzhi Zhang , Shuigeng Zhou , Shanghong Zhao , Jihong Guan , Tao Zou

We study large deviations of the size of the largest connected component in a general class of inhomogeneous random graphs with iid weights, parametrized so that the degree distribution is regularly varying. We derive a large-deviation…

Probability · Mathematics 2024-07-02 Joost Jorritsma , Bert Zwart

Random graphs with a given degree sequence are often constructed using the configuration model, which yields a random multigraph. We may adjust this multigraph by a sequence of switchings, eventually yielding a simple graph. We show that,…

Probability · Mathematics 2019-02-01 Svante Janson

In this article, we prove a local large deviation principle (LLDP) for the empirical locality measure of typed random networks on $n$ nodes conditioned to have a given \emph{ empirical type measure} and \emph{ empirical link measure.} From…

Information Theory · Computer Science 2018-02-27 Kwabena Doku-Amponsah

We study the mean length $\ell(k)$ of the shortest paths between a vertex of degree $k$ and other vertices in growing networks, where correlations are essential. In a number of deterministic scale-free networks we observe a power-law…

Statistical Mechanics · Physics 2015-06-24 S. N. Dorogovtsev , J. F. F. Mendes , J. G. Oliveira

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

We study the limiting degree distribution of the vertex splitting model introduced in \cite{DDJS:2009}. This is a model of randomly growing ordered trees, where in each time step the tree is separated into two components by splitting a…

Probability · Mathematics 2016-12-01 Sigurdur Örn Stefánsson , Erik Thörnblad

We propose to apply several gradient estimation techniques to enable the differentiation of programs with discrete randomness in High Energy Physics. Such programs are common in High Energy Physics due to the presence of branching processes…

Machine Learning · Statistics 2023-09-01 Michael Kagan , Lukas Heinrich

Consider the inhomogeneous Erd\H{o}s-R\'enyi random graph (ERRG) on $n$ vertices for which each pair $i,j\in\{1,\ldots,n\}$, $i\neq j$ is connected independently by an edge with probability $r_n(\frac{i-1}{n},\frac{j-1}{n})$, where…

Probability · Mathematics 2022-08-23 Maarten Markering

The Large Deviation Principle (LDP) and the Central Limit Theorem (CLT) are central pillars of probability theory. While their formulations are established under the i.i.d. assumption, the probabilistic foundation for power-law…

Probability · Mathematics 2026-04-22 Hiroki Suyari , Antonio M. Scarfone

This paper establishs the large deviation principle (LDP) for multiple averages on $\mathbb{N}^d$. We extend the previous work of [Carinci et al., Indag. Math. 2012] to multidimensional lattice $\mathbb{N}^d$ for $d\geq 2$. The same…

Probability · Mathematics 2021-06-21 Jung-Chao Ban , Wen-Guei Hu , Guan-Yu Lai

In this paper, we study the distribution of distances in random Apollonian network structures (RANS), a family of graphs which has a one-to-one correspondence with planar ternary trees. Using multivariate generating functions that express…

Combinatorics · Mathematics 2007-12-14 Olivier Bodini , Alexis Darrasse , Michèle Soria

We consider temporal models of rapidly changing Markovian networks modulated by time-evolving spatially dependent kernels that define rates for edge formation and dissolution. Alternatively, these can be viewed as Markovian networks with…

Probability · Mathematics 2025-06-11 Shankar Bhamidi , Amarjit Budhiraja , Souvik Ray

We find large deviation principles for the degree distribution and the proportion of isolated vertices for the near intermediate random geometric graph models on n vertices placed uniformly in [0, 1]^d, for d in N. In the course of the…

Probability · Mathematics 2014-06-13 Kwabena Doku-Amponsah

We prove the the large deviation principle(LDP) for the law of the one-dimensional semilinear stochastic partial differential equations driven by nonlinear multiplicative noise. Firstly, combining the energy estimate and approximation…

Probability · Mathematics 2023-03-09 Qiyong Cao , Hongjun Gao

A weighted recursive tree is an evolving tree in which vertices are assigned random vertex-weights and new vertices connect to a predecessor with a probability proportional to its weight. Here, we study the maximum degree and near-maximum…

Probability · Mathematics 2023-01-31 Laura Eslava , Bas Lodewijks , Marcel Ortgiese