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We investigate the totally asymmetric simple exclusion process (TASEP) in the presence of a bottleneck, i.e. a sequence of consecutive defect sites with reduced hopping rate. The influence of such a bottleneck on the phase diagram is…

Cellular Automata and Lattice Gases · Physics 2009-11-13 Philip Greulich , Andreas Schadschneider

We study a minimal lattice model which describes bidirectional transport of "particles" driven along a one dimensional track, as is observed in microtubule based, motor protein driven bidirectional transport of cargo vesicles, lipid bodies…

Statistical Mechanics · Physics 2011-09-29 Sudipto Muhuri , Lenin Shagolsem , Madan Rao

We consider the asymmetric simple exclusion process (TASEP) on open network consisting of three consecutively coupled macroscopic chain segments with a shortcut between the tail of the first segment and the head of the third one. The model…

Biological Physics · Physics 2015-06-18 Nadezhda Bunzarova , Nina Pesheva , Jordan Brankov

We report here results on the study of the totally asymmetric simple exclusion processes (TASEP), defined on an open network, consisting of head and tail simple chain segments with a double-chain section inserted in-between. Results of…

Statistical Mechanics · Physics 2013-06-19 Nina Pesheva , Jordan Brankov

We propose an extension of the totally asymmetric simple exclusion process (TASEP) in which particles hopping along a lattice can be blocked by obstacles that dynamically attach/detach from lattice sites. The model can be thought as TASEP…

Statistical Mechanics · Physics 2019-02-20 Bartlomiej Waclaw , Justyna Cholewa-Waclaw , Philip Greulich

We introduce a mean-field theoretical framework to describe multiple totally asymmetric simple exclusion processes (TASEPs) with different lattice lengths, entry and exit rates, competing for a finite reservoir of particles. We present…

Statistical Mechanics · Physics 2012-03-09 Philip Greulich , Luca Ciandrini , Rosalind J. Allen , M. Carmen Romano

We study a continuous-space version of the totally asymmetric simple exclusion process (TASEP), consisting of interacting Brownian particles subject to a driving force in a periodic external potential. Particles are inserted at the leftmost…

Statistical Mechanics · Physics 2010-02-02 Jose Eduardo de Oliveira Rodrigues , Ronald Dickman

The TASEP is a paradigmatic model of out-of-equilibrium statistical physics, for which many quantities have been computed, either exactly or by approximate methods. In this work we study two new kinds of observables that have some relevance…

Statistical Mechanics · Physics 2017-09-20 Julien Cividini , Cécile Appert-Rolland

We develop a mean-field theory for the totally asymmetric simple exclusion process (TASEP) with open boundaries, in order to investigate the so-called dynamical transition. The latter phenomenon appears as a singularity in the relaxation…

Statistical Mechanics · Physics 2020-08-11 Davide Botto , Alessandro Pelizzola , Marco Pretti , Marco Zamparo

The TASEP is a paradigmatic model from non-equilibrium statistical physics, which describes particles hopping along a lattice of discrete sites. The TASEP is applicable to a broad range of different transport systems, but does not consider…

Statistical Mechanics · Physics 2012-03-20 Chris A. Brackley , Luca Ciandrini , M. Carmen Romano

A system consisting of two parallel coupled channels where particles in one of them follow the rules of totally asymmetric exclusion processes (TASEP) and in another one move as in symmetric simple exclusion processes (SSEP) is investigated…

Statistical Mechanics · Physics 2009-11-13 K. Tsekouras , A. B. Kolomeisky

We consider the dynamics of a single shock in a partially asymmetric simple exclusion process (PASEP) on a finite lattice with open boundaries in the sublattice-parallel updating scheme. We then construct the steady state of the system by…

Statistical Mechanics · Physics 2016-05-16 S. R. Masharian , F. Zamani

Nonequilibrium collective motion is ubiquitous in nature and often results in a rich collection of intringuing phenomena, such as the formation of shocks or patterns, subdiffusive kinetics, traffic jams, and nonequilibrium phase…

Statistical Mechanics · Physics 2011-12-20 Mauro Mobilia , Tobias Reichenbach , Hauke Hinsch , Thomas Franosch , Erwin Frey

Motor protein motion on biopolymers can be described by models related to the totally asymmetric simple exclusion process (TASEP). Inspired by experiments on the motion of kinesin-4 motors on antiparallel microtubule overlaps, we analyze a…

Biological Physics · Physics 2016-09-07 Hui-Shun Kuan , Meredith D. Betterton

We study the nonequilibrium steady states in totally asymmetric exclusion processes (TASEP) with open boundary conditions having spatially inhomogeneous hopping rates. Considering smoothly varying hopping rates, we show that the steady…

Statistical Mechanics · Physics 2023-01-03 Atri Goswami , Mainak Chatterjee , Sudip Mukherjee

We consider a finite one-dimensional totally asymmetric simple exclusion process (TASEP) with four types of particles, $\{1,0,\bar{1},*\}$, in contact with reservoirs. Particles of species $0$ can neither enter nor exit the lattice, and…

Statistical Mechanics · Physics 2019-11-11 Erik Aas , Arvind Ayyer , Svante Linusson , Samu Potka

The traffic of molecular motors through open tube-like compartments is studied using lattice models. These models exhibit boundary-induced phase transitions related to those of the asymmetric simple exclusion process (ASEP) in one…

Statistical Mechanics · Physics 2007-05-23 Stefan Klumpp , Reinhard Lipowsky

We introduce a new model to study the oscillations of opposite flows sharing a common bottleneck and moving on two Totally Asymmetric Simple Exclusion Process (TASEP) lanes. We provide a theoretical analysis of the phase diagram, valid when…

Statistical Mechanics · Physics 2012-06-15 Asja Jelić , Cécile Appert-Rolland , Ludger Santen

The process of protein synthesis in biological systems resembles a one dimensional driven lattice gas in which the particles have spatial extent, covering more than one lattice site. We expand the well studied Totally Asymmetric Exclusion…

Statistical Mechanics · Physics 2009-11-10 Leah B. Shaw , R. K. P. Zia , Kelvin H. Lee

The asymmetric simple exclusion process (ASEP) is a paradigmatic nonequilibrium many-body system that describes the asymmetric random walk of particles with exclusion interactions in a lattice. Although the ASEP is recognized as an exactly…

Statistical Mechanics · Physics 2024-03-05 Yuki Ishiguro , Jun Sato