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Agent-based models have been employed to describe numerous processes in immunology. Simulations based on these types of models have been used to enhance our understanding of immunology and disease pathology. We review various agent-based…

Cell Behavior · Quantitative Biology 2017-12-05 Amy L. Bauer , Catherine A. A. Beauchemin , Alan S. Perelson

Immunology is the emerging research area which deals with the study of the immune system in any living organism. It is modelled through various computational and mathematical models to deal with the problem facing while to boost the immune…

Cell Behavior · Quantitative Biology 2019-06-21 Gajendra Pratap Singh , Madhuri Jha

Tipping elements in the Earth System receive increased scientific attention over the recent years due to their nonlinear behavior and the risks of abrupt state changes. While being stable over a large range of parameters, a tipping element…

Physics and Society · Physics 2023-10-25 Jan Kohler , Nico Wunderling , Jonathan F. Donges , Jürgen Vollmer

Agent-based modeling is a computational dynamic modeling technique that may be less familiar to some readers. Agent-based modeling seeks to understand the behaviour of complex systems by situating agents in an environment and studying the…

Multiagent Systems · Computer Science 2023-04-19 G. Wade McDonald , Nathaniel D. Osgood

In the present work, a light-controlled device cell is established based on the dye-sensitized solar cell using nanocrystalline TiO2 films. Voltage-current curves are characterized by three types of transport behaviors: linear increase,…

Chemical Physics · Physics 2015-06-11 X. Q. Wang , C. B. Cai , Y. F. Wang , W. Q. Zhou , Y. M. Lu , Z. Y. Liu

We present an individual-based model for the coevolutionary dynamics between CD8+ cytotoxic T lymphocytes (CTLs) and tumour cells. In this model, every cell is viewed as an individual agent whose phenotypic state is modelled by a discrete…

Dynamical Systems · Mathematics 2022-11-23 Luís Almeida , Chloe Audebert , Emma Leschiera , Tommaso Lorenzi

The evidence that Flowering Locus T (FT) protein and its paralog Twin Sister of FT, act as the long distance floral stimulus, or at least that they are part of it in diverse plant species, has attracted much attention in recent years.…

Biomolecules · Quantitative Biology 2012-10-25 I. G. Matsoukas , A. J. Massiah , B. Thomas

Microtubules are an essential physical building block of cellular systems. They are organized using specific crosslinkers, motors, and influencers of nucleation and growth. With the addition of anti-parallel crosslinkers, microtubule…

Biological Physics · Physics 2021-06-23 Sumon Sahu , Lena Herbst , Ryan Quinn , Jennifer L. Ross

Follicle-stimulating hormone (FSH) and luteinizing hormone (LH) play essential roles in animal reproduction. They exert their function through binding to their cognate receptors, which belong to the large family of G protein-coupled…

Molecular Networks · Quantitative Biology 2018-08-07 Mohammed Akli Ayoub , Romain Yvinec , Pascale Crépieux , Anne Poupon

We introduce a functor which associates to every measure preserving system (X,B,\mu,T) a topological system (C_2(\mu),\tilde{T}) defined on the space of 2-fold couplings of \mu, called the topological lens of T. We show that often the…

Dynamical Systems · Mathematics 2009-01-12 Eli Glasner , Mariusz Lemanczyk , Benjamin Weiss

A topological dynamical system induces two natural systems, one is on the hyperspace and the other one is on the probability space. The connection among some dynamical properties on the original space and on the induced spaces are…

Dynamical Systems · Mathematics 2014-01-03 Jie Li , Kesong Yan , Xiangdong Ye

A major issue in biology is the understanding of the interactions between proteins. These interactions can be described by a network, where the proteins are modeled by nodes and the interactions by edges. The origin of these protein…

Biological Physics · Physics 2011-08-01 Christian M. Schneider , Lucilla de Arcangelis , Hans J. Herrmann

Identifying subtle phenotypic variations in cellular images is critical for advancing biological research and accelerating drug discovery. These variations are often masked by the inherent cellular heterogeneity, making it challenging to…

Computer Vision and Pattern Recognition · Computer Science 2026-01-28 Anis Bourou , Biel Castaño Segade , Thomas Boyer , Valérie Mezger , Auguste Genovesio

Consider a decision maker who is responsible to collect observations so as to enhance his information in a speedy manner about an underlying phenomena of interest. The policies under which the decision maker selects sensing actions can be…

Information Theory · Computer Science 2015-06-12 Mohammad Naghshvar , Tara Javidi

Many living and non-living complex systems can be modeled and understood as collective systems made of heterogeneous components that self-organize and generate nontrivial morphological structures and behaviors. This chapter presents a brief…

Adaptation and Self-Organizing Systems · Physics 2018-01-09 Hiroki Sayama

It is well-known that in two dimensions Turing systems produce spots, stripes and labyrinthine patterns, and in three dimensions lamellar and spherical structures or their combinations are observed. We study transitions between these states…

Statistical Mechanics · Physics 2007-05-23 Teemu Leppanen , Mikko Karttunen , R. A. Barrio , Kimmo Kaski

We introduce and analyze several aspects of a new model for cell differentiation. It assumes that differentiation of progenitor cells is a continuous process. From the mathematical point of view, it is based on partial differential…

Analysis of PDEs · Mathematics 2013-01-21 Marie Doumic , Anna Marciniak-Czochra , Benoit Perthame , Jorge P. Zubelli

The action potential signal of nerve and muscle is produced by voltage sensitive channels that include a specialized device to sense voltage. Gating currents of the voltage sensor are now known to depend on the back-and-forth movements of…

Biological Physics · Physics 2017-07-11 Tzyy-Leng Horng , Robert S. Eisenberg , Chun Liu , Francisco Bezanilla

In multi-agent cooperative tasks, the presence of heterogeneous agents is familiar. Compared to cooperation among homogeneous agents, collaboration requires considering the best-suited sub-tasks for each agent. However, the operation of…

Multiagent Systems · Computer Science 2024-08-15 Songchen Fu , Shaojing Zhao , Ta Li , YongHong Yan

The capacity of proteins to interact specifically with one another underlies our conceptual understanding of how living systems function. Systems-level study of specificity in protein-protein interactions is complicated by the fact that the…

Biomolecules · Quantitative Biology 2009-11-13 Eric Deeds , orr Ashenberg , Jaline Gerardine , Eugene Shakhnovich