Related papers: A tropical interpretation of m-dissimilarity maps
In this paper we fully describe all tropical linear mappings in the tropical projective plane, that is, maps from the tropical plane to itself given by tropical multiplication by an order 3 matrix. An erratum has been added fixing two…
Denote by $p_m$ the $m$-th prime number ($p_1=2,~p_2=3,~p_3=5,~ p_4=7,~\ldots$). Let $T$ be a rooted tree with branches $T_1,T_2,\ldots,T_r$. The Matula number $M(T)$ of $T$ is $p_{M(T_1)}\cdot p_{M(T_2)}\cdot \ldots \cdot p_{M(T_r)}$,…
Rotation distances measure the differences in structure between rooted ordered binary trees. The one-dimensional skeleta of associahedra are rotation graphs, where two vertices representing trees are connected by an edge if they differ by a…
A {\em tree cover} of a metric space $(X,d)$ is a collection of trees, so that every pair $x,y\in X$ has a low distortion path in one of the trees. If it has the stronger property that every point $x\in X$ has a single tree with low…
For a vertex $v$ of a graph $G$, a spanning tree $T$ of $G$ is distance-preserving from $v$ if, for any vertex $w$, the distance from $v$ to $w$ on $T$ is the same as the distance from $v$ to $w$ on $G$. If two vertices $u$ and $v$ are…
Within the field of phylogenetics there is great interest in distance measures to quantify the dissimilarity of two trees. Recently, a new distance measure has been proposed: the Maximum Parsimony (MP) distance. This is based on the…
We develop a combinatorial framework to study certain polyhedral maps which are higher-dimensional analogues of tropical covers between metric graphs. Under a mild combinatorial assumption, we show that a map satisfies the so-called…
A subset of leaves of a rooted tree induces a new tree in a natural way. The density of a tree $D$ inside a larger tree $T$ is the proportion of such leaf-induced subtrees in $T$ that are isomorphic to $D$ among all those with the same…
In analogy to other concepts of a similar nature, we define the inducibility of a rooted binary tree. Given a fixed rooted binary tree $B$ with $k$ leaves, we let $\gamma(B,T)$ be the proportion of all subsets of $k$ leaves in $T$ that…
In this paper, we study tropical Weierstrass points. These are the analogues for tropical curves of ramification points of line bundles on algebraic curves. For a divisor on a tropical curve, we associate intrinsic weights to the connected…
A closed-form formula is derived for the number of occurrences of matches of a multiset of patterns among all ordered (plane-planted) trees with a given number of edges. A pattern looks like a tree, with internal nodes and leaves, but also…
This work addresses the intrinsic relationship between trees and networks (i.e. graphs). A complete (invertible) mapping is presented which allows trees to be mapped into weighted graphs and then backmapped into the original tree without…
Trees with labelled leaves and with all other vertices of degree three play an important role in systematic biology and other areas of classification. A classical combinatorial result ensures that such trees can be uniquely reconstructed…
Motivated from the study of eccentricity, center, and sum of eccentricities in graphs and trees, we introduce several new distance-based global and local functions based on the smallest distance from a vertex to some leaf (called the…
We attempt to shed new light on the notion of 'tree-like' metric spaces by focusing on an approach that does not use the four-point condition. Our key question is: Given metric space $M$ on $n$ points, when does a fully labelled…
Phylogenetic trees are a central tool in understanding evolution. They are typically inferred from sequence data, and capture evolutionary relationships through time. It is essential to be able to compare trees from different data sources…
We study a tropical linear regression problem consisting in finding the best approximation of a set of points by a tropical hyperplane. We establish a strong duality theorem, showing that the value of this problem coincides with the maximal…
The Robinson-Foulds (RF) distance is by far the most widely used measure of dissimilarity between trees. Although the distribution of these distances has been investigated for twenty years, an algorithm that is explicitly polynomial time…
Let $G$ be a connected graph and $W$ be a set of vertices of $G$. The representation multiset of a vertex $v$ with respect to $W$, $r_m (v|W)$, is defined as a multiset of distances between $v$ and the vertices in $W$. If $r_m (u |W) \neq…
An L(2, 1)-labeling of a graph is an assignment of nonnegative integers to the vertices of G such that adjacent vertices receive numbers differed by at least 2, and vertices at distance 2 are assigned distinct numbers. The L(2, 1)-labeling…