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We develop a theory of reversible diffusion-controlled reactions with generalized binding/unbinding kinetics. In this framework, a diffusing particle can bind to the reactive substrate after a random number of arrivals onto it, with a given…

Chemical Physics · Physics 2023-10-03 Denis S. Grebenkov

The Wright-Fisher family of diffusion processes is a widely used class of evolutionary models. However, simulation is difficult because there is no known closed-form formula for its transition function. In this article we demonstrate that…

Methodology · Statistics 2023-10-02 Paul A. Jenkins , Dario Spano

We present the exact solution for the full dynamics of a nonequilibrium spin chain and its dual reaction-diffusion model, for arbitrary initial conditions. The spin chain is driven out of equilibrium by coupling alternating spins to two…

Statistical Mechanics · Physics 2007-05-23 M. Mobilia , B. Schmittmann , R. K. P. Zia

Properties of reaction zones resulting from A+B -> C type reaction-diffusion processes are investigated by analytical and numerical methods. The reagents A and B are separated initially and, in addition, there is an initial macroscopic…

Other Condensed Matter · Physics 2009-11-11 Ioana Bena , Michel Droz , Kirsten Martens , Zoltan Racz

Different branching and annihilating random walk models are investigated by cluster mean-field method and simulations in one and two dimensions. In case of the A -> 2A, 2A -> 0 model the cluster mean-field approximations show diffusion…

Statistical Mechanics · Physics 2009-11-10 Geza Odor

We study three basic diffusion-controlled reaction processes -- annihilation, coalescence, and aggregation. We examine the evolution starting with the most natural inhomogeneous initial configuration where a half-line is uniformly filled by…

Statistical Mechanics · Physics 2015-05-13 P. L. Krapivsky , E. Ben-Naim

Reaction-diffusion equations with a nonlinear source have been widely used to model various systems, with particular application to biology. Here, we provide a solution technique for these types of equations in $N$-dimensions. The…

Analysis of PDEs · Mathematics 2016-08-24 P Broadbridge , BH Bradshaw-Hajek

We study a reaction-diffusion system on the real line, where the reactions of the species are given by one reversible reaction according to the mass-action law. We describe different positive limits at both sides of infinity and investigate…

Analysis of PDEs · Mathematics 2023-04-07 Alexander Mielke , Stefanie Schindler

A process based on particle evaporation, diffusion and redeposition is applied iteratively to a two-dimensional object of arbitrary shape. The evolution spontaneously transforms the object morphology, converging to branched structures.…

Statistical Mechanics · Physics 2009-10-31 M. Filoche , B. Sapoval

The convergence to equilibrium of renormalized solutions to reaction-cross-diffusion systems in a bounded domain under no-flux boundary conditions is studied. The reactions model complex balanced chemical reaction networks coming from…

Analysis of PDEs · Mathematics 2018-08-20 Esther S. Daus , Bao Quoc Tang

This paper studies countable systems of linearly and hierarchically interacting diffusions taking values in the positive quadrant. These systems arise in population dynamics for two types of individuals migrating between and interacting…

Probability · Mathematics 2007-09-09 Don A. Dawson , Andreas Greven , Frank den Hollander , Rongfeng Sun , Jan M. Swart

Constrained diffusions in convex polyhedral domains with a general oblique reflection field, and with a diffusion coefficient scaled by a small parameter, are considered. Using an interior Dirichlet heat kernel lower bound estimate for…

Probability · Mathematics 2013-08-19 Amarjit Budhiraja , Zhen-Qing Chen

The most general one dimensional reaction-diffusion model with nearest-neighbor interactions solvable through the empty interval method, and without any restriction on the particle-generation from two adjacent empty sites is studied. It is…

Statistical Mechanics · Physics 2007-05-23 Amir Aghamohammadi , Mohammad Khorrami

Many cellular and subcellular biological processes can be described in terms of diffusing and chemically reacting species (e.g. enzymes). Such reaction-diffusion processes can be mathematically modelled using either deterministic…

Biological Physics · Physics 2015-06-26 Radek Erban , S. Jonathan Chapman

We consider a reaction--diffusion equation in a domain consisting of two bulk regions connected via small channels periodically distributed within a thin layer. The height and the thickness of the channels are of order $\epsilon$, and the…

Analysis of PDEs · Mathematics 2020-07-09 Apratim Bhattacharya , Markus Gahn , Maria Neuss-Radu

Reversible reaction-diffusion systems display anomalous dynamics characterized by a power-law relaxation toward stationarity. In this paper we study in the aging regime the nonequilibrium dynamical properties of some model systems with…

Statistical Mechanics · Physics 2009-11-13 Vlad Elgart , Michel Pleimling

We consider a generalised diffusion equation in two dimensions for modeling diffusion on a comb-like structures. We analyse the probability distribution functions and we derive the mean squared displacement in $x$ and $y$ directions.…

Statistical Mechanics · Physics 2016-06-23 Trifce Sandev , Alexander Iomin , Holger Kantz , Ralf Metzler , Aleksei Chechkin

Diffusion Policy has shown great performance in robotic manipulation tasks under stochastic perturbations, due to its ability to model multimodal action distributions. Nonetheless, its reliance on a computationally expensive reverse-time…

Robotics · Computer Science 2025-11-20 Gabriel Lauzier , Alexandre Girard , François Ferland

Interacting-Particle Reaction Dynamics (iPRD) simulates the spatiotemporal evolution of particles that experience interaction forces and can react with one another. The combination of interaction forces and reactions enable a wide range of…

Chemical Physics · Physics 2018-07-20 Christoph Fröhner , Frank Noé

We propose a reaction-transport model for CTRW with non-linear reactions and non-exponential waiting time distributions. We derive non-linear evolution equation for mesoscopic density of particles. We apply this equation to the problem of…

Statistical Mechanics · Physics 2015-05-14 Sergei Fedotov
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