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Related papers: The Blind Watchmaker Network: Scale-freeness and E…

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A random null model termed the Blind Watchmaker network (BW) has been shown to reproduce the degree distribution found in metabolic networks. This might suggest that natural selection has had little influence on this particular network…

Biological Physics · Physics 2010-11-01 Sebastian Bernhardsson , Petter Minnhagen

Metabolic networks are known to be scale free but the evolutionary origin of this structural property is not clearly understood. One way of studying the dynamical process is to compare the metabolic networks of species that have arisen at…

Molecular Networks · Quantitative Biology 2007-05-23 Shalini , Areejit Samal , Varun Giri , Sandeep Krishna , N. Raghuram , Sanjay Jain

Understanding design principles of complex cellular organization is one of the major challenges in biology. Recent analysis of the large-scale cellular organization has revealed the scale-free nature and robustness of metabolic and protein…

Molecular Networks · Quantitative Biology 2007-05-23 Hiroki R. Ueda , John B. Hogenesch

Using a simple model with link removals as well as link additions, we show that an evolving network is scale free with a degree exponent in the range of (2, 4]. We then establish a relation between the network evolution and a set of…

Mathematical Physics · Physics 2007-05-23 Dinghua Shi , Liming Liu , Xiang Zhu , Huijie Zhou , Binbin Wang

Many biological networks have been labelled scale-free as their degree distribution can be approximately described by a powerlaw distribution. While the degree distribution does not summarize all aspects of a network it has often been…

Molecular Networks · Quantitative Biology 2007-05-23 M. P. H. Stumpf , P. J. Ingram , I. Nouvel , C. Wiuf

We show how scale-free degree distributions can emerge naturally from growing networks by using random walks for selecting vertices for attachment. This result holds for several variants of the walk algorithm and for a wide range of…

Statistical Mechanics · Physics 2007-05-23 T. S. Evans , J. P. Saramaki

A random network is grown by introducing at unit rate randomly selected nodes on the Euclidean space. A node is randomly connected to its $i$-th predecessor of degree $k_i$ with a directed link of length $\ell$ using a probability…

Statistical Mechanics · Physics 2009-11-07 S. S. Manna , Parongama Sen

In this letter, we proposed an ungrowing scale-free network model, wherein the total number of nodes is fixed and the evolution of network structure is driven by a rewiring process only. In spite of the idiographic form of $G$, by using a…

Statistical Mechanics · Physics 2015-06-25 Yan-Bo Xie , Tao Zhou , Bing-Hong Wang

Scale-free and non-computable characteristics of natural networks are found to result from the least-time dispersal of energy. To consider a network as a thermodynamic system is motivated since ultimately everything that exists can be…

General Physics · Physics 2011-06-22 Tuomo Hartonen , Arto Annila

Cellular metabolic networks exhibit scale-free topologies with power-law degree distributions across diverse organisms. Although such topologies are often linked to mutational robustness and evolutionary advantage, their role in metabolic…

Statistical Mechanics · Physics 2026-03-23 Kota Mitsumoto , Shuji Ishihara

We present a simple mechanism for generating undirected scale-free networks using random walkers, where the network growth is determined by choosing parent vertices by sequential random walks. We show that this mechanism produces scale-free…

Statistical Mechanics · Physics 2007-05-23 Jari Saramaki , Kimmo Kaski

In this work we study a simple evolutionary model of bipartite networks which its evolution is based on the duplication of nodes. Using analytical results along with numerical simulation of the model, we show that the above evolutionary…

Disordered Systems and Neural Networks · Physics 2009-11-10 A. Ramezanpour

Background: Recent models of genome-proteome evolution have shown that some of the key traits displayed by the global structure of cellular networks might be a natural result of a duplication-diversification (DD) process. One of the…

Genomics · Quantitative Biology 2007-05-23 Ricard V. Sole , Pau Fernandez

Co-evolution exhibited by a network system, involving the intricate interplay between the dynamics of the network itself and the subsystems connected by it, is a key concept for understanding the self-organized, flexible nature of…

Physics and Society · Physics 2012-11-14 Takaaki Aoki , Toshio Aoyagi

While the emergence of a power law degree distribution in complex networks is intriguing, the degree exponent is not universal. Here we show that the betweenness centrality displays a power-law distribution with an exponent \eta which is…

Statistical Mechanics · Physics 2009-11-07 K. -I. Goh , E. OH , H. Jeong , B. Kahng , D. Kim

Scale-free networks are abundant in nature and society, describing such diverse systems as the world wide web, the web of human sexual contacts, or the chemical network of a cell. All models used to generate a scale-free topology are…

Statistical Mechanics · Physics 2009-11-07 Albert-Laszlo Barabasi , Erzsebet Ravasz , Tamas Vicsek

Systems as diverse as genetic networks or the world wide web are best described as networks with complex topology. A common property of many large networks is that the vertex connectivities follow a scale-free power-law distribution. This…

Disordered Systems and Neural Networks · Physics 2015-06-25 Albert-Laszlo Barabasi , Reka Albert

A central claim in modern network science is that real-world networks are typically "scale free," meaning that the fraction of nodes with degree $k$ follows a power law, decaying like $k^{-\alpha}$, often with $2 < \alpha < 3$. However,…

Physics and Society · Physics 2019-03-19 Anna D. Broido , Aaron Clauset

Many complex systems--from social and communication networks to biological networks and the Internet--are thought to exhibit scale-free structure. However, prevailing explanations rely on the constant addition of new nodes, an assumption…

Adaptation and Self-Organizing Systems · Physics 2022-11-10 Christopher W. Lynn , Caroline M. Holmes , Stephanie E. Palmer

Generative mechanisms which lead to empirically observed structure of networked systems from diverse fields like biology, technology and social sciences form a very important part of study of complex networks. The structure of many…

Physics and Society · Physics 2015-12-03 Snehal M. Shekatkar , G. Ambika
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