English
Related papers

Related papers: Transient Binding and Dissipation in Semi-flexible…

200 papers

The linear viscoelastic response of single semiflexible polymer chains in the infinite-dilution limit is studied using Brownian dynamics simulations of coarse-grained bead-spring chains. The springs obey the FENE-Fraenkel force law, a…

Soft Condensed Matter · Physics 2026-03-03 Amit Varakhedkar , P. Sunthar , J. Ravi Prakash

Inspired by the ubiquity of composite filamentous networks in nature we investigate models of biopolymer networks that consist of interconnected floppy and stiff filaments. Numerical simulations carried out in three dimensions allow us to…

Biomolecules · Quantitative Biology 2015-05-19 Elisabeth M. Huisman , Claus Heussinger , Cornelis Storm , Gerard T. Barkema

The freely jointed chain is often applied to model the thermodynamics of single polymer chains, but the traditional formulation of the model lacks internal energy changes due to bond stretching. For this reason, the extensible freely…

Statistical Mechanics · Physics 2026-05-13 Michael R. Buche

The influence of structural constraints on the relaxation dynamics of three polyurea networks with varying degree of crosslinking, has been studied by means of a thorough analysis of broadband dielectric spectroscopy measurements. Two…

Soft Condensed Matter · Physics 2018-10-03 Nerea Sebastián , Christophe Contal , Antoni Sánchez-Ferrer , Marco Pieruccini

Modern power networks face increasing challenges in controlling their transient frequency behavior at acceptable levels due to low inertia and highly-dynamic units. This paper presents a distributed control strategy regulated on a subset of…

Systems and Control · Computer Science 2018-09-20 Yifu Zhang , Jorge Cortes

Vitrimers, an important subset of dynamically crosslinked polymer networks, have many technological applications for their excellent properties, and the ability to be re-processed through plastic flow above the so-called vitrification…

Soft Condensed Matter · Physics 2020-05-20 Alexandra Gablier , Mohand O. Saed , Eugene M. Terentjev

Viscoelastic and thermodynamic properties of transient gels comprised of telechelic polymers are theoretically studied. We extend classical theories of transient networks so that correlations among polymer chains through the network…

Soft Condensed Matter · Physics 2009-11-11 Tsutomu Indei

We study a model of an active gel of cross-linked semiflexible filaments with additional active linkers such as myosin II clusters. We show that the coupling of the elasticity of the semiflexible filaments to the mechanical properties of…

Soft Condensed Matter · Physics 2009-11-13 T. B. Liverpool , M. C. Marchetti , J. -F. Joanny , J. Prost

We theoretically investigate the kinetics of the folding transition of a single semiflexible polymer. In the folding transition, the growth rate decrease with an increase in the number of monomers in a collapsed domain, suggesting that the…

Soft Condensed Matter · Physics 2009-11-13 Natsuhiko Yoshinaga

Transient bonds between fast linkers and slower particles are widespread in physical and biological systems. In spite of their diverse structure and function, a commonality is that the linkers diffuse on timescales much faster compared to…

Soft Condensed Matter · Physics 2023-06-06 Sophie Marbach , Christopher E. Miles

Biological molecules can form hydrogen bonds between nearby residues, leading to helical secondary structures. The associated reduction of configurational entropy leads to a temperature dependence of this effect: the "helix-coil…

Soft Condensed Matter · Physics 2009-11-07 S. Kutter , E. M. Terentjev

We explore the effect of random permanent cross-links on a system of directed polymers confined between two planes with their end-points free to slide on them. We treat the cross-links as quenched disorder and we use a semimicroscopic…

Soft Condensed Matter · Physics 2010-02-22 Stephan Ulrich , Annette Zippelius , Panayotis Benetatos

The nonequilibrium dynamical behavior and structure formation of end-functionalized semiflexible polymer suspensions under flow are investigated by mesoscale hydrodynamic simulations. The hybrid simulation approach combines the…

Soft Condensed Matter · Physics 2015-11-04 Jin Suk Myung , Roland G. Winkler , Gerhard Gompper

The dynamic-mechanical response of flexible polymer networks is studied in the framework of tube model, in the limit of small affine deformations, using the approach based on Rayleighian dissipation function. The dynamic complex modulus G*…

Soft Condensed Matter · Physics 2009-10-31 S. F. Edwards , H. Takano , E. M. Terentjev

At zero temperature, spring networks with connectivity below Maxwell's isostatic threshold undergo a mechanical phase transition from a floppy state at small strains to a rigid state for applied shear strain above a critical strain…

Soft Condensed Matter · Physics 2023-11-08 Sadjad Arzash , Anupama Gannavarapu , Fred C. MacKintosh

Polymerization and formation of crosslinked polymer networks are important processes in manufacturing, materials fabrication, and in the case of hydrated polymer networks, synthesis of biomedical materials, drug delivery, and tissue…

Soft Condensed Matter · Physics 2022-12-15 Sam C. P. Norris , Andrea M. Kasko , Tom Chou , Maria R. D'Orsogna

We investigate wrinkling of two-dimensional random and triangular semiflexible polymer networks under shear. Both types of semiflexible networks exhibit wrinkling above a small critical shear angle, which scales with an exponent of the…

Soft Condensed Matter · Physics 2014-06-06 Pascal Müller , Jan Kierfeld

A network of semiflexible biopolymers, known as the cytoskeleton, and molecular motors play fundamental mechanical roles in cellular activities. The cytoskeletal response to forces generated by molecular motors is profoundly linked to…

Soft Condensed Matter · Physics 2022-05-25 N. Honda , K. Shiraki , F. van Esterik , S. Inokuchi , H. Ebata , D. Mizuno

Networks of filamentous proteins play a crucial role in cell mechanics. These cytoskeletal networks, together with various crosslinking and other associated proteins largely determine the (visco)elastic response of cells. In this letter we…

Disordered Systems and Neural Networks · Physics 2009-11-10 D. A. Head , A. J. Levine , F. C. MacKintosh

Gels made of telechelic polymers connected by reversible crosslinkers are a versatile design platform for biocompatible viscoelastic materials. Their linear response to a step strain displays a fast, near-exponential relaxation when using…