Related papers: Discrete breathers in protein structures
In this work, we study the dynamics of an infinite array of nonlinear dimer oscillators which are linearly coupled as in the classical model of Su, Schrieffer and Heeger (SSH). The ratio of in-cell and out-of-cell couplings of the SSH model…
Collective protein modes are expected to be important for facilitating energy transfer in the Fenna-Matthews-Olson (FMO) complex, however to date little work has focussed on the microscopic details of these vibrations. The nonlinear network…
The idea that structural disorder might be a novel mechanism of protein interaction is widespread in the Literature, although the number of statistically significant structural studies supporting this is surprisingly low. At variance with…
In the present work, we examine a prototypical model for the formation of bright breathers in nonlinear left-handed metamaterial lattices. Utilizing the paradigm of nonlinear transmission lines, we build a relevant lattice and develop a…
Discrete breathers with purely anharmonic short-range interaction potentials localize super-exponentially becoming compact-like. We analyze their spatial localization properties and their dynamical stability. Several branches of solutions…
Spatially periodic modulation of the intersite coupling in two-dimensional (2D) nonlinear lattices modifies the eigenvalue spectrum by opening mini-gaps in it. This work aims to build stable localized modes in the new bandgaps. Numerical…
We investigate the formation of discrete breathers (DBs) and the dynamics of the mixture of two-species Bose-Einstein condensates (BECs) in open boundary optical lattices using the discrete nonlinear Schr\"{o}dinger equations. The results…
We investigate the spectral properties of one-dimensional spatially modulated nonlinear phononic lattices, and their evolution as a function of amplitude. In the linear regime, the stiffness modulations define a family of periodic and…
A group-theoretical approach for studying localized periodic and quasiperiodic vibrations in 2D and 3D lattice dynamical models is developed. This approach is demonstrated for the scalar models on the plane square lattice. The…
We examine - both experimentally and numerically - a two-dimensional nonlinear driven electrical lattice with honeycomb structure. Drives are considered over a range of frequencies both outside (below and above) and inside the band of…
In the present chapter, we explore the possibility of a Frenkel-Kontorova (discrete sine-Gordon) model to bear interactions that decay algebraically with space, inspired by the continuum limit of the corresponding fractional derivative. In…
The self-organization of proteins into enriched compartments and the formation of complex patterns are crucial processes for life on the cellular level. Liquid-liquid phase separation is one mechanism for forming such enriched compartments.…
Intrinsically disordered proteins (IDPs) constitute a broad set of proteins with few uniting and many diverging properties. IDPs-and intrinsically disordered regions (IDRs) interspersed between folded domains-are generally characterized as…
In this work, we present a mechanical example of an experimental realization of a stability reversal between on-site and inter-site centered localized modes. A corresponding realization of a vanishing of the Peierls-Nabarro barrier allows…
The phenomenon of intrinsic localization in discrete nonlinear extended systems, i.e. the (generic) existence of discrete breathers, is shown to be not restricted to periodic solutions but it also extends to more complex (chaotic) dynamical…
We present an experimental study of discrete breathers in an underdamped Josephson-junction array. Breathers exist under a range of dc current biases and temperatures, and are detected by measuring dc voltages. We find the maximum allowable…
We study the thermal equilibrium of nonlinear Klein-Gordon chains at the limit of small coupling (anticontinuum limit). We show that the persistence distribution associated to the local energy density is a useful tool to study the…
We generate and observe discrete rotobreathers in Josephson junction ladders with open boundaries. Rotobreathers are localized excitations that persist under the action of a spatially uniform force. We find a rich variety of stable dynamic…
We demonstrate that period-doubled discrete breathers appear from the anti-continuum limit of the driven Peyrard-Bishop-Dauxois model of DNA. These novel breathers result from a stability overlap between sub-harmonic solutions of the driven…
Breathers may be mobile close to an instability threshold where the frequency of a pinning mode vanishes. The translation mode is a marginal mode that is a solution of the linearized (Hill) equation of the breather which grows linearly in…