Related papers: Discrete breathers in protein structures
We report the results of molecular dynamics simulations of an off-lattice protein model featuring a physical force-field and amino-acid sequence. We show that localized modes of nonlinear origin (discrete breathers) emerge naturally as…
We introduce a topology-based nonlinear network model of protein dynamics with the aim of investigating the interplay of spatial disorder and nonlinearity. We show that spontaneous localization of energy occurs generically and is a…
The role of the rigidity of a peptide chain in its equilibrium dynamics is investigated within a realistic model with stringent microscopically derived coupling interaction potential and effective on-site potential. The coupling interaction…
In this paper we propose a novel theoretical framework for interpreting long-range dynamical correlations unveiled in proteins through NMR measurements. The theoretical rationale relies on the hypothesis that correlated motions in proteins…
We report on the existence of discrete breathers in a one-dimensional, mass-in-mass chain with linear intersite coupling and nonlinear Hertzian local resonators, which is motivated by recent studies of the dynamics of microspheres adhered…
The existence of discrete breathers (DBs), or intrinsic localized modes (localized periodic oscillations of transzigzag) is shown. In the localization region periodic contraction-extension of valence C-C bonds occurs which is accompanied by…
We study the dynamics of the discrete nonlinear Schr{\"o}dinger lattice initialized such that a very long transitory period of time in which standard Boltzmann statistics is insufficient is reached. Our study of the nonlinear system locked…
Discrete breathers (DBs) -- a spatial time-periodic localization of energy -- are predicted in a large variety of non-linear systems. Motivated by the conceptual bridging of the DBs phenomena in classical and quantum mechanical…
We study the nonlinear perturbation of a high-order exceptional point (EP) of the order equal to the system site number $L$ in a Hatano-Nelson model with unidirectional hopping and Kerr nonlinearity. Notably, We find a class of discrete…
We present a systematic study of the existence and stability of discrete breathers that are spatially localized in the bulk of a one-dimensional chain of compressed elastic beads that interact via Hertzian contact. The chain is diatomic,…
We explore dynamics of discrete breathers and multi-breathers in finite one-dimensional chain. The model involves parabolic on-site potential with rigid constraints and linear nearest-neighbor coupling. The rigid non-ideal impact…
A nonlinear chain with six-order polynomial on-site potential is used to analyze the evolution of the total to kinetic energy ratio during development of modulational instability of extended nonlinear vibrational modes. For the on-site…
In strained monoatomic chains with Lennard-Jones interactions, we revealed a stable static non-homogeneous structure appearing as a result of a certain phase transition. Positions of individual particles in this structure form an exact…
We present a family of discrete breathers, which exists in a nonlinear polarizability model of ferroelectric materials. The core-shell model is set up in its non-dimensionalized Hamiltonian form and its linear spectrum is examined.…
Discrete breathers, or intrinsic localized modes, are spatially localized, time--periodic, nonlinear excitations that can exist and propagate in systems of coupled dynamical units. Recently, some experiments show the sighting of a form of…
We investigate the existence of spatially localised solutions, in the form of discrete breathers, in general damped and driven nonlinear lattice systems of coupled oscillators. Conditions for the exponential decay of the difference between…
A new mechanism of LENR in solids is proposed, which is based on the large amplitude anharmonic lattice vibrations, a.k.a. intrinsic localized modes or discrete breathers (DBs). In particular, so called gap DBs, which can arise in diatomic…
We discuss the process by which energy, initially evenly distributed in a nonlinear lattice, can localize itself into large amplitude excitations. We show that, the standard modulational instability mechanism, which can initiate the process…
We study a discrete two-dimensional nonlinear system that allows for discrete breather solutions. We perform a spectral analysis of the lattice dynamics at thermal equilibrium and use a cooling technique to measure the amount of breathers…
Intrinsic Localized Modes (ILM) (or Discrete Breathers, DB) are localized oscillatory modes known to occur in atomic or molecular chains characterized by coupling and/or on-site potential nonlinearity. Quasi-crystals of charged mesoscopic…