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We discuss the population dynamics with selection and random diffusion, keeping the total population constant, in a fitness landscape associated with Constraint Satisfaction, a paradigm for difficult optimization problems. We obtain a phase…

Populations and Evolution · Quantitative Biology 2016-11-23 Tommaso Brotto , Guy Bunin , Jorge Kurchan

Structured populations are ubiquitous across the biological sciences. Mathematical models of these populations allow us to understand how individual physiological traits drive the overall dynamics in aggregate. For example, linear age- or…

Analysis of PDEs · Mathematics 2022-04-25 Sabina L. Altus , Jeffrey C. Cameron , David M. Bortz

A wealth of astronomical data indicate the presence of mass discrepancies in the Universe. The motions observed in a variety of classes of extragalactic systems exceed what can be explained by the mass visible in stars and gas. Either (i)…

Cosmology and Nongalactic Astrophysics · Physics 2014-05-28 Benoit Famaey , Stacy McGaugh

In making models for biological systems one expects to grasp the biology and be able to use ones intuition to predict the outcome. This paper is about the discrepancy between what is expected and what is the outcome of the analysis of the…

Populations and Evolution · Quantitative Biology 2024-04-05 Joost H. J. van Opheusden , Lia Hemerik

The galactose network is a complex system responsible for galactose metabolism. It has been extensively studied experimentally and mathematically at the unicellular level to broaden our understanding of its regulatory mechanisms at higher…

Molecular Networks · Quantitative Biology 2016-02-12 Tina M. Mitre , Anmar Khadra , Michael C. Mackey

We investigate the interplay of collective and chaotic motion in a classical self-bound N-body system with two-body interactions. This system displays a hierarchy of three well separated time scales that govern the onset of chaos, damping…

chao-dyn · Physics 2009-10-31 Thomas Papenbrock

As a key energy challenge, we urgently require a better understanding of how growing urban populations interact with municipal energy systems and the resulting impact on energy demand across city neighborhoods, which are dense hubs of both…

Physics and Society · Physics 2016-09-06 Neda Mohammadi , John E Taylor

The metabolism is the motor behind the biological complexity of an organism. One problem of characterizing its large-scale structure is that it is hard to know what to compare it to. All chemical reaction systems are shaped by the same…

Molecular Networks · Quantitative Biology 2011-05-10 Petter Holme , Mikael Huss , Sang Hoon Lee

Muscles consume metabolic energy (ATP) to produce force. A mathematical model for energy expenditure can be useful in estimating real-time costs of movements or to predict energy optimal movements. Metabolic cost models developed so far…

Tissues and Organs · Quantitative Biology 2025-01-03 Sriram Sekaripuram Muralidhar , Kristen Heitman , Samuel C. Walcott , Manoj Srinivasan

The motion of a rigid body is described in Classical Mechanics with the venerable Euler's equations which are based on the assumption that the relative distances among the constituent particles are fixed in time. Real bodies, however,…

Statistical Mechanics · Physics 2023-03-28 Pep Español , Mark Thachuk , J. A. de la Torre

We construct a pathwise formulation of a growing population of cells, based on two different samplings of lineages within the population, namely the forward and backward samplings. We show that a general symmetry relation, called…

Populations and Evolution · Quantitative Biology 2021-11-03 Arthur Genthon , David Lacoste

The maintenance of diversity, the `commonness of rarity', and compositional turnover are ubiquitous features of species-rich communities. Through a minimal model, we consider how these features reflect the interplay between environmental…

Populations and Evolution · Quantitative Biology 2025-12-04 Emil Mallmin , Arne Traulsen , Silvia De Monte

Cells with the same genome can exist in different phenotypes. and can change between distinct phenotypes when subject to specific stimuli and microenvironments. Some examples include cell differentiation during development, reprogramming…

Quantitative Methods · Quantitative Biology 2022-09-28 Jianhua Xing

Cell deformability is an essential determinant for tissue-scale mechanical nature, such as fluidity and rigidity, and is thus crucial for understanding tissue homeostasis and stable developmental processes. However, numerical simulations…

Tissues and Organs · Quantitative Biology 2023-03-08 Nen Saito , Shuji Ishihara

Organisms that exploit different environments may experience a stochastic delay in adjusting their fitness when they switch habitats. We study two species whose fitness is determined by the species composition of the local environment, as…

Biological Physics · Physics 2019-02-04 Marianne Bauer , Erwin Frey

Emotional disorders and psychological flourishing are the result of complex interactions between positive and negative affects that depend on external events and the subject's internal representations. Based on psychological data, we…

Applications · Statistics 2015-05-19 Jonathan Touboul , Alberto Romagnoni , Robert Schwartz

Autophagy is a conserved biological stress response in mammalian cells that is responsible for clearing damaged proteins and organelles from the cytoplasm and recycling their contents via the lysosomal pathway. In cases of mild stress,…

Molecular Networks · Quantitative Biology 2015-05-11 I. Tavassoly , J. Parmar , A. N. Shajahan-Haq , R. Clarke , W. T. Baumann , J. J. Tyson

In the theory of special relativity, energy can be found in two forms: kinetic energy and rest mass. Potential energy of a body is actually stored under the form of rest mass, interaction energy too, temperature is not. Information acquired…

General Physics · Physics 2024-04-17 D. Lairez

Measures of economic mobility represent aggregate values for how individual wealth changes over time. As such, these measures may not describe the feasibility of a typical individual to change their wealth. To address this limitation, we…

General Economics · Economics 2024-07-23 Viktor Stojkoski

Many-body systems relaxing to equilibrium can exhibit complex dynamics even if their steady state is trivial. At low temperatures or high densities their evolution is often dominated by steric hindrances affecting particle motion [1,2,3].…

Statistical Mechanics · Physics 2016-05-10 M. M. Valado , C. Simonelli , M. D. Hoogerland , I. Lesanovsky , J. P. Garrahan , E. Arimondo , D. Ciampini , O. Morsch