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In this work, we revisit the fundamental and well-studied problem of approximate pattern matching under edit distance. Given an integer $k$, a pattern $P$ of length $m$, and a text $T$ of length $n \ge m$, the task is to find substrings of…

Data Structures and Algorithms · Computer Science 2021-06-14 Tomasz Kociumaka , Ely Porat , Tatiana Starikovskaya

The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic programming solution for this problem computes the edit-distance between…

Data Structures and Algorithms · Computer Science 2016-10-05 Danny Hermelin , Gad M. Landau , Shir Landau , Oren Weimann

The Cartesian tree of a sequence captures the relative order of the sequence's elements. In recent years, Cartesian tree matching has attracted considerable attention, particularly due to its applications in time series analysis. Consider a…

Data Structures and Algorithms · Computer Science 2026-02-10 Panagiotis Charalampopoulos , Jonas Ellert , Manal Mohamed

We define sequence patterns of length $n$ and level $\ell$ to be equivalence classes of sequences that have $n$ elements from the set of $\ell$ integer symbols $\{1,2,\ldots,\ell\}$ with no restriction on repetition, where the equivalence…

Combinatorics · Mathematics 2023-01-10 Pengyu Liu , Jingzhou Na

We first introduce the Hamming distance between two strings. Then, we apply this concept to the representations of whole numbers in base n for all positive integers n > 2. We claim that a simple formula exists for the sum of all Hamming…

Discrete Mathematics · Computer Science 2012-05-01 Anunay Kulshrestha

We study the online variant of the language distance problem for two classical formal languages, the language of palindromes and the language of squares, and for the two most fundamental distances, the Hamming distance and the edit…

Data Structures and Algorithms · Computer Science 2024-05-01 Gabriel Bathie , Tomasz Kociumaka , Tatiana Starikovskaya

The NP-complete Permutation Pattern Matching problem asks whether a permutation P (the pattern) can be matched into a permutation T (the text). A matching is an order-preserving embedding of P into T. In the Generalized Permutation Pattern…

Computational Complexity · Computer Science 2013-01-15 Marie-Louise Bruner , Martin Lackner

We study the problem of estimating the size of a maximum matching in sublinear time. The problem has been studied extensively in the literature and various algorithms and lower bounds are known for it. Our result is a $0.5109$-approximation…

Data Structures and Algorithms · Computer Science 2025-06-03 Sepideh Mahabadi , Mohammad Roghani , Jakub Tarnawski

Given a context free language $\mathcal{L(G)}$ over alphabet $\Sigma$ and a string $s \in \Sigma^*$, {\em the language edit distance} problem seeks the minimum number of edits (insertions, deletions and substitutions) required to convert…

Data Structures and Algorithms · Computer Science 2024-10-25 Tomasz Kociumaka , Barna Saha

The Ulam distance of two permutations on $[n]$ is $n$ minus the length of their longest common subsequence. In this paper, we show that for every $\varepsilon>0$, there exists some $\alpha>0$, and an infinite set $\Gamma\subseteq…

Information Theory · Computer Science 2024-05-14 Elazar Goldenberg , Mursalin Habib , Karthik C. S

We consider approximate circular pattern matching (CPM, in short) under the Hamming and edit distance, in which we are given a length-$n$ text $T$, a length-$m$ pattern $P$, and a threshold $k>0$, and we are to report all starting positions…

Data Structures and Algorithms · Computer Science 2025-06-13 Panagiotis Charalampopoulos , Tomasz Kociumaka , Jakub Radoszewski , Solon P. Pissis , Wojciech Rytter , Tomasz Waleń , Wiktor Zuba

We provide an O(log log OPT)-approximation algorithm for the problem of guarding a simple polygon with guards on the perimeter. We first design a polynomial-time algorithm for building epsilon-nets of size O(1/epsilon log log 1/epsilon) for…

Computational Geometry · Computer Science 2010-01-26 James King , David Kirkpatrick

The average properties of the well-known Subset Sum Problem can be studied by the means of its randomised version, where we are given a target value $z$, random variables $X_1, \ldots, X_n$, and an error parameter $\varepsilon > 0$, and we…

In the decades-old Pattern Matching with Edits problem, given a length-$n$ string $T$ (the text), a length-$m$ string $P$ (the pattern), and a positive integer $k$ (the threshold), the task is to list the $k$-error occurrences of $P$ in…

Data Structures and Algorithms · Computer Science 2026-04-20 Tomasz Kociumaka , Jakob Nogler , Philip Wellnitz

Longest common substring (LCS), longest palindrome substring (LPS), and Ulam distance (UL) are three fundamental string problems that can be classically solved in near linear time. In this work, we present sublinear time quantum algorithms…

Quantum Physics · Physics 2023-12-29 François Le Gall , Saeed Seddighin

Edit distance is a fundamental measure of distance between strings and has been widely studied in computer science. While the problem of estimating edit distance has been studied extensively, the equally important question of actually…

Data Structures and Algorithms · Computer Science 2018-05-08 Moses Charikar , Ofir Geri , Michael P. Kim , William Kuszmaul

We study the problem of finding a triangulation T of a planar point set S such as to minimize the expected distance between two points x and y chosen uniformly at random from S. By distance we mean the length of the shortest path between x…

Computational Geometry · Computer Science 2012-06-21 Laszlo Kozma

The approximate period recovery problem asks to compute all $\textit{approximate word-periods}$ of a given word $S$ of length $n$: all primitive words $P$ ($|P|=p$) which have a periodic extension at edit distance smaller than $\tau_p$ from…

Data Structures and Algorithms · Computer Science 2018-07-30 Tomasz Kociumaka , Jakub Radoszewski , Wojciech Rytter , Juliusz Straszyński , Tomasz Waleń , Wiktor Zuba

In this paper we study a variant of string pattern matching which deals with tuples of strings known as \textit{multi-track strings}. Multi-track strings are a generalisation of strings (or \textit{single-track strings}) that have primarily…

Data Structures and Algorithms · Computer Science 2019-12-02 Carl Barton , Ewan Birney , Tomas Fitzgerald

Persistence diagrams (PD)s play a central role in topological data analysis. This analysis requires computing distances among such diagrams such as the $1$-Wasserstein distance. Accurate computation of these PD distances for large data sets…

Computational Geometry · Computer Science 2025-05-13 Tamal K. Dey , Simon Zhang
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