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Phylogenetic networks are a generalization of phylogenetic trees to leaf-labeled directed acyclic graphs that represent ancestral relationships between species whose past includes non-tree-like events such as hybridization and horizontal…

Combinatorics · Mathematics 2021-04-13 Janosch Döcker , Simone Linz , Charles Semple

The proper parts of face lattices of convex polytopes are shown to satisfy a strong form of the Cohen--Macaulay property, namely that removing from their Hasse diagram all edges in any closed interval results in a Cohen--Macaulay poset of…

Combinatorics · Mathematics 2015-11-11 Christos A. Athanasiadis , Myrto Kallipoliti

A circle graph is the intersection graph of a set of chords in a circle. Keil [Discrete Applied Mathematics, 42(1):51-63, 1993] proved that Dominating Set, Connected Dominating Set, and Total Dominating Set are NP-complete in circle graphs.…

Data Structures and Algorithms · Computer Science 2012-05-17 Nicolas Bousquet , Daniel Gonçalves , George B. Mertzios , Christophe Paul , Ignasi Sau , Stéphan Thomassé

Hypertrees and noncrossing trees are well-established objects in the combinatorics literature, but the hybrid notion of a noncrossing hypertree has received less attention. In this article I investigate the poset of noncrossing hypertrees…

Combinatorics · Mathematics 2017-07-21 Jon McCammond

In recent Kwasniewski's papers inspired by O. V. Viskov it was shown that the $\psi$-calculus in parts appears to be almost automatic, natural extension of classical operator calculus of Rota - Mullin or equivalently - of umbral calculus of…

Combinatorics · Mathematics 2008-02-09 Ewa Krot-Sieniawska

A pebble tree is an ordered tree where each node receives some colored pebbles, in such a way that each unary node receives at least one pebble, and each subtree has either one more or as many leaves as pebbles of each color. We show that…

Combinatorics · Mathematics 2025-12-12 Vincent Pilaud

The cyclic and dihedral groups can be made to act on the set Acyc(Y) of acyclic orientations of an undirected graph Y, and this gives rise to the equivalence relations ~kappa and ~delta, respectively. These two actions and their…

Combinatorics · Mathematics 2008-02-29 Matthew Macauley , Henning S. Mortveit

In this paper, we study oriented bipartite graphs. In particular, we introduce "bitransitive" graphs. Several characterizations of bitransitive bitournaments are obtained. We show that bitransitive bitounaments are equivalent to acyclic…

Combinatorics · Mathematics 2021-03-16 Sandip Das , Prantar Ghosh , Shamik Ghosh , Sagnik Sen

The set of all perfect matchings of a plane (weakly) elementary bipartite graph equipped with a partial order is a poset, moreover the poset is a finite distributive lattice and its Hasse diagram is isomorphic to $Z$-transformation directed…

Combinatorics · Mathematics 2018-10-18 Xu Wang , Xuxu Zhao , Haiyuan Yao

Fibonacci chains are special diatomic, harmonic chains with uniform nearest neighbour interaction and two kinds of atoms (mass-ratio $r$) arranged according to the self-similar binary Fibonacci sequence $ABAABABA...$, which is obtained by…

Condensed Matter · Physics 2007-05-23 Wolfdieter Lang

We study random graph models for directed acyclic graphs, an important class of networks that includes citation networks, food webs, and feed-forward neural networks among others. We propose two specific models, roughly analogous to the…

Physics and Society · Physics 2009-10-16 Brian Karrer , M. E. J. Newman

The coefficients of the chain polynomial of a finite poset enumerate chains in the poset by their number of elements. It has been a challenging open problem to determine which posets have real-rooted chain polynomials. Two new classes of…

Combinatorics · Mathematics 2025-12-02 Christos A. Athanasiadis , Theo Douvropoulos , Katerina Kalampogia-Evangelinou

We introduce Cayley posets as posets arising naturally from pairs $S<T$ of semigroups, much in the same way that Cayley graph arises from a (semi)group and a subset. We show that Cayley posets are a common generalization of several known…

Combinatorics · Mathematics 2019-08-27 Ignacio García-Marco , Kolja Knauer , Guillaume Mercui-Voyant

For an integer $n\geq 1$, we display a poset $\Phi_n$ whose maximal chains are in bijection with the $n\times n$ alternating sign matrices. The Hasse diagram $\widehat \Phi_n$ is obtained from the $n$-cube by adding some edges. We show that…

Combinatorics · Mathematics 2017-10-16 Paul Terwilliger

Compound graphs are networks in which vertices can be grouped into larger subsets, with these subsets capable of further grouping, resulting in a nesting that can be many levels deep. In several applications, including biological workflows,…

Human-Computer Interaction · Computer Science 2024-08-09 Chang Han , Justin Lieffers , Clayton Morrison , Katherine E. Isaacs

Bayesian networks are directed acyclic graphs representing independence relationships among a set of random variables. A random variable can be regarded as a set of exhaustive and mutually exclusive propositions. We argue that there are…

Artificial Intelligence · Computer Science 2013-03-25 Dekang Lin

Fibonacci sequence, generated by summing the preceding two terms, is a classical sequence renowned for its elegant properties. In this paper, leveraging properties of generalized Fibonacci sequences and formulas for consecutive sums of…

Combinatorics · Mathematics 2026-04-28 Zixian Yang , Jianchao Bai

Recently, Daligault, Rao and Thomass\'e asked in [3] if every hereditary class which is well-quasi-ordered by the induced subgraph relation is of bounded clique-width. There are two reasons why this questions is interesting. First, it…

Combinatorics · Mathematics 2015-08-26 Aistis Atminas , Vadim V. Lozin , Igor Razgon

This paper presents several algorithms for hashing directed graphs. The algorithms given are capable of hashing entire graphs as well as assigning hash values to specific nodes in a given graph. The notion of node symmetry is made precise…

Discrete Mathematics · Computer Science 2023-06-21 Caleb Helbling

A chain poset, by definition, consists of chains of ordered elements in a poset. We study the chain posets associated to two posets: the Boolean algebra and the poset of isotropic flags. We prove that, in both cases, the chain posets…

Combinatorics · Mathematics 2018-02-19 Ian T. Johnson