Related papers: Bethe approximation for the hydrogen-bonding self-…
We investigate a lattice-fluid model of water, defined on a three-dimensional body centered cubic lattice. Model molecules possess a tetrahedral symmetry, with four equivalent bonding arms, aiming to mimic the formation of hydrogen bonds.…
Avalanches in sandpiles are represented throughout a process of percolation in a Bethe lattice with a feedback mechanism. The results indicate that the frequency spectrum and probability distribution of avalanches resemble more to…
We formulate the algebraic Bethe ansatz solution of the SU(N) vertex models with rather general non-diagonal toroidal boundary conditions. The reference states needed in the Bethe ansatz construction are found by performing gauge…
In this article we investigate the lattices of Dyck paths of type $A$ and $B$ under dominance order, and explicitly describe their Heyting algebra structure. This means that each Dyck path of either type has a relative pseudocomplement with…
We employ a discrete integral-reflection representation of the double affine Hecke algebra of type $C^\vee C$ at the critical level q=1, to endow the open finite $q$-boson system with integrable boundary interactions at the lattice ends. It…
The Bethe Ansatz is a method that is used in quantum integrable models in order to solve them explicitly. This method is explained here in a general framework, which applies to 1D quantum spin chains, 2D statistical lattice models (vertex…
We implement fully the algebraic Bethe ansatz for the XXX Heisenberg spin chain in the case when both boundary matrices can be brought to the upper-triangular form. We define the Bethe vectors which yield the strikingly simple expression…
We solve the problem of a chain, modeled as a self-avoiding walk, grafted o the wall limiting a semi-infinite Bethe lattice of arbitrary coordination number q. In particular, we determine the pressure exerted by the polymer on the wall, as…
Protein design is the inverse approach of the three-dimensional (3D) structure prediction for elucidating the relationship between the 3D structures and amino acid sequences. In general, the computation of the protein design involves a…
The quantum XY, Heisenberg, and transverse field Ising models on hyperbolic lattices are studied by means of the Tensor Product Variational Formulation algorithm. The lattices are constructed by tessellation of congruent polygons with…
We discuss recent theoretical developments in the study of simple lattice models of proteins. Such models are designed to understand general features of protein structures and mechanism of folding. Among the topics covered are (i) the use…
The aqueous solvent profoundly influences protein folding, yet its effects are relatively poorly understood. In this study, we investigate the impact of solvation on the folding of lattice proteins by using Monte Carlo simulations. The…
In the standard approach to lattice proteins the models based on nearest neighbor interaction are used. In this kind of models it is difficult to explain the existence of secondary structures --- special preferred conformations of protein…
Model off-lattice sequences in two dimensions are constructed so that their native states are close to an on-lattice target. The Hamiltonian involves the Lennard-Jones and harmonic interactions. The native states of these sequences are…
Based on the inhomogeneous T-Q relation constructed via the off-diagonal Bethe Ansatz, the Bethe-type eigenstates of the XXZ spin-1/2 chain with arbitrary boundary fields are constructed. It is found that by employing two sets of gauge…
We consider six different secondary structures of proteins and construct two types of Go-type off-lattice models: with the steric constraints and without. The basic aminoacid-aminoacid potential is Lennard Jones for the native contacts and…
We study the phase diagram at finite temperature of a system of Fermi particles on the sites of the Bethe lattice with coordination number z and interacting through onsite U and nearest-neighbor V interactions. This is a physical…
The lattice system with competing interactions that models biological objects (colloids, ensembles of protein molecules, etc.) is considered. This system is the lattice fluid on a square lattice with attractive interaction between nearest…
We provide a brief characterization of the main features of the homogeneous sine-Gordon models and discuss a general construction principle for colour valued S-matrices, associated to a pair of simply laced Lie algebras, which contain the…
Square water takes into account the directionality of hydrogen bonds. The model is reviewed and its properties as a solvent for apolar particles are studied through Monte Carlo simulations. Specific heat measurements are used to identify…