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In an experimental study of single enzyme reactions, it has been proposed that the rate constants of the enzymatic reactions fluctuate randomly, according to a given distribution. To quantify the uncertainty arising from random rate…

Quantitative Methods · Quantitative Biology 2012-02-07 Chia Ying Lee

Unlike macroscopic engines, the molecular machinery of living cells is strongly affected by fluctuations. Stochastic Thermodynamics uses Markovian jump processes to model the random transitions between the chemical and configurational…

Statistical Mechanics · Physics 2015-10-19 Bernhard Altaner , Artur Wachtel , Jürgen Vollmer

Living organisms are molecular systems with self-sustained dynamics via energy conversion through molecular cooperation, resulting in highly complex macroscopic behaviors. Construction of such autonomous macroscopic dynamics at a molecular…

A characteristic feature of complex systems in general is a tight coupling between their constituent parts. In complex socio-economic systems this kind of behavior leads to self-organization, which may be both desirable (e.g. social…

Statistical Finance · Quantitative Finance 2017-03-29 Aleksejus Kononovicius , Vygintas Gontis

We introduce and study a class of models of free fermions hopping between neighbouring sites with random Brownian amplitudes. These simple models describe stochastic, diffusive, quantum, unitary dynamics. We focus on periodic boundary…

Statistical Mechanics · Physics 2019-04-17 M. Bauer , D. Bernard , T. Jin

We consider fluctuations of the time-averaged current in the one-dimensional weakly-asymmetric exclusion process on a ring. The optimal density profile which sustains a given fluctuation exhibits an instability for low enough currents,…

Statistical Mechanics · Physics 2013-10-29 Carlos P. Espigares , Pedro L. Garrido , Pablo I. Hurtado

Stochasticity is a defining feature of the pairwise forces governing interactions in biological systems-from molecular motors to cell-cell adhesion-yet its consequences on large-scale dynamics remain poorly understood. Here, we show that…

Soft Condensed Matter · Physics 2025-08-27 Henry Alston , Raphael Voituriez , Thibault Bertrand

The fluctuation theorem for entropy production is a remarkable symmetry of the distribution of produced entropy that holds universally in non-equilibrium steady states with Markovian dynamics. However, in systems with slow degrees of…

Statistical Mechanics · Physics 2018-02-21 Matthias Uhl , Patrick Pietzonka , Udo Seifert

We propose an exactly soluble W*-dynamical system generated by repeated harmonic perturbations of the one-mode quantum oscillator. In the present paper we deal with the case of isolated system. Although dynamics is Hamiltonian and…

Functional Analysis · Mathematics 2014-04-14 Hiroshi Tamura , Valentin Zagrebnov

In this paper we demonstrate a route to develop coherence in a system of non-driven oscillators. Here, the coherence is brought about via physical collisions through which the oscillators exchange energy. While coherence in the classical…

Chaotic Dynamics · Physics 2021-11-18 Ayanesh Maiti , Shankar Ghosh

The performance of spectral clustering relies on the fluctuations of the entries of the eigenvectors of a similarity matrix, which has been left uncharacterized until now. In this letter, it is shown that the signal $+$ noise structure of a…

Machine Learning · Statistics 2024-05-28 Hugo Lebeau , Florent Chatelain , Romain Couillet

We discuss several classes of integrable Floquet systems, i.e. systems which do not exhibit chaotic behavior even under a time dependent perturbation. The first class is associated with finite-dimensional Lie groups and infinite-dimensional…

Statistical Mechanics · Physics 2018-04-20 Vladimir Gritsev , Anatoli Polkovnikov

Biochemical oscillations are prevalent in living organisms. Systems with a small number of constituents cannot sustain coherent oscillations for an indefinite time because of fluctuations in the period of oscillation. We show that the…

Statistical Mechanics · Physics 2017-06-29 Andre C Barato , Udo Seifert

Active hydrodynamic theories are a powerful tool to study the emergent ordered phases of internally driven particles such as bird flocks, bacterial suspension and their artificial analogues. While theories of orientationally ordered phases…

Soft Condensed Matter · Physics 2019-03-06 Ananyo Maitra , Martin Lenz

Biodiversity and extinction are central issues in evolution. Dynamical balance among different species in ecosystems is often described by deterministic replicator equations with moderate success. However, fluctuations are inevitable,…

Populations and Evolution · Quantitative Biology 2014-11-25 Tsung-Cheng Lu , Yi-Ko Chen , Hsiu-Hau Lin , Chun-Chung-Chen

Two species with similar resource requirements respond in a characteristic way to variations in their habitat -- their abundances rise and fall in concert. We use this idea to learn how bacterial populations in the microbiota respond to…

Populations and Evolution · Quantitative Biology 2015-10-02 Charles K. Fisher , Thierry Mora , Aleksandra M. Walczak

While it is commonly observed that the shape dynamics of mammalian cells can undergo large random fluctuations, theoretical models aiming at capturing cell mechanics often focus on the deterministic part of the motion. In this paper, we…

Biological Physics · Physics 2021-04-07 Vikram Deshpande , Antonio DeSimone , Robert McMeeking , Pierre Recho

We investigate density fluctuations in three-dimensional chiral active fluids by using a simple model of helical self-propelled particles. Helical motion is generated by a constant angular velocity (or chiral torque) acting on the…

Soft Condensed Matter · Physics 2025-10-29 Yuta Kuroda , Takeshi Kawasaki , Kunimasa Miyazaki

We calculate the distribution of current fluctuations in two simple exclusion models. Although these models are classical, we recover even for small systems such as a simple or a double barrier, the same distibution of current as given by…

Mesoscale and Nanoscale Physics · Physics 2009-11-10 Philippe-E. Roche , Bernard Derrida , Benoit Doucot

The new phenomenon of semiquantum chaos is analyzed in a classically regular double-well oscillator model. Here it arises from a doubling of the number of effectively classical degrees of freedom, which are nonlinearly coupled in a Gaussian…

chao-dyn · Physics 2009-10-28 T. Blum , H. -Th. Elze