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To model biological systems using networks, it is desirable to allow more than two levels of expression for the nodes and to allow the introduction of parameters. Various modeling and simulation methods addressing these needs using Boolean…

Molecular Networks · Quantitative Biology 2014-04-23 Yi Ming Zou

Parameter sharing has proven to be a parameter-efficient approach. Previous work on Transformers has focused on sharing parameters in different layers, which can improve the performance of models with limited parameters by increasing model…

Machine Learning · Computer Science 2023-06-19 Ye Lin , Mingxuan Wang , Zhexi Zhang , Xiaohui Wang , Tong Xiao , Jingbo Zhu

Recent research has shown the existence of significant redundancy in large Transformer models. One can prune the redundant parameters without significantly sacrificing the generalization performance. However, we question whether the…

Computation and Language · Computer Science 2022-02-15 Chen Liang , Haoming Jiang , Simiao Zuo , Pengcheng He , Xiaodong Liu , Jianfeng Gao , Weizhu Chen , Tuo Zhao

This article presents the development, implementation, and validation of a loss-optimized and circuit parameter-sensitive TPS modulation scheme for a dual-active-bridge DC-DC converter. The proposed approach dynamically adjusts control…

Signal Processing · Electrical Eng. & Systems 2025-02-26 Saikat Dey , Ayan Mallik

Astrophysical explorations are underpinned by large-scale stellar spectroscopy surveys, necessitating a paradigm shift in spectral fitting techniques. Our study proposes three enhancements to transcend the limitations of the current…

Instrumentation and Methods for Astrophysics · Physics 2023-06-29 Tomasz Różański , Yuan-Sen Ting , Maja Jabłońska

The paper combines research approaches that traditionally have been disjoint: 1) model checking as used in formal verification of programs, and 2) auto-tuning as often used in high-performance computing. Auto-tuning frameworks optimize…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-17 Natalia Garanina , Sergey Staroletov , Sergei Gorlatch

Point process modeling is gaining increasing attention, as point process type data are emerging in numerous scientific applications. In this article, motivated by a neuronal spike trains study, we propose a novel point process regression…

Methodology · Statistics 2020-12-10 Xiwei Tang , Lexin Li

Parameter-efficient tuning (PET) methods can effectively drive extremely large pre-trained language models (PLMs) by training only minimal parameters. Different PET methods utilize different manually designed tunable modules. In small PLMs,…

Computation and Language · Computer Science 2023-12-19 Yusheng Su , Chi-Min Chan , Jiali Cheng , Yujia Qin , Yankai Lin , Shengding Hu , Zonghan Yang , Ning Ding , Xingzhi Sun , Guotong Xie , Zhiyuan Liu , Maosong Sun

In computer simulations of spiking neural networks, often it is assumed that every two neurons of the network are connected by a probability of 2\%, 20\% of neurons are inhibitory and 80\% are excitatory. These common values are based on…

Neurons and Cognition · Quantitative Biology 2015-03-06 Hamed Seyed-allaei

Each complex network (or class of networks) presents specific topological features which characterize its connectivity and highly influence the dynamics of processes executed on the network. The analysis, discrimination, and synthesis of…

Disordered Systems and Neural Networks · Physics 2009-09-29 Luciano da F. Costa , Francisco A. Rodrigues , Gonzalo Travieso , P. R. Villas Boas

Aside from regular beamline experiments at light sources, the preparation steps before these experiments are also worth systematic consideration in terms of automation; a representative category in these steps is attitude tuning, which…

Instrumentation and Detectors · Physics 2024-11-06 Peng-Cheng Li , Xiao-Xue Bi , Zhen Zhang , Xiao-Bao Deng , Chun Li , Li-Wen Wang , Gong-Fa Liu , Yi Zhang , Ai-Yu Zhou , Yu Liu

Mesh-like structures, such as mucus gel or cytoskeleton networks, are ubiquitous in biological systems. These intricate structures are composed of cross-linked, semi-flexible bio-filaments, crucial to numerous biological processes. In many…

Soft Condensed Matter · Physics 2024-01-10 Yeongjin Kim , Won Kyu Kim , Jae-Hyung Jeon

This work concerns a many-body deterministic model that displays life-like properties as emergence, complexity, self-organization, spontaneous compartmentalization, and self-regulation. The model portraits the dynamics of an ensemble of…

Adaptation and Self-Organizing Systems · Physics 2023-07-11 Alessandro Scirè , Valerio Annovazzi-Lodi

The performance of a classifier depends on the tuning of its parame ters. In this paper, we have experimented the impact of various tuning parameters on the performance of a deep convolutional neural network (DCNN). In the ex perimental…

Computer Vision and Pattern Recognition · Computer Science 2025-06-05 Mahe Zabin , Ho-Jin Choi , Md. Monirul Islam , Jia Uddin

Walking animals, like stick insects, cockroaches or ants, demonstrate a fascinating range of locomotive abilities and complex behaviors. The locomotive behaviors can consist of a variety of walking patterns along with adaptation that allow…

Neural and Evolutionary Computing · Computer Science 2016-08-08 Sakyasingha Dasgupta , Dennis Goldschmidt , Florentin Wörgötter , Poramate Manoonpong

Diffusion-driven instability is a fundamental mechanism underlying pattern formation in spatially extended systems. In almost all existing works, diffusion across the links of the underlying network is modeled through scalar weights,…

Statistical Mechanics · Physics 2026-02-16 Anna Gallo , Wilfried Segnou , Timoteo Carletti

We present the results of training a large trajectory model using real-world user check-in data. Our approach follows a pre-train and fine-tune paradigm, where a base model is pre-trained via masked trajectory modeling and then adapted…

Machine Learning · Computer Science 2023-12-04 Alameen Najjar

Generative models of complex systems often require post-hoc parameter adjustments to produce useful outputs. For example, energy-based models for protein design are sampled at an artificially low ''temperature'' to generate novel,…

Quantitative Methods · Quantitative Biology 2025-12-11 Peter W Fields , Vudtiwat Ngampruetikorn , David J Schwab , Stephanie E Palmer

Real-world control applications in complex and uncertain environments require adaptability to handle model uncertainties and robustness against disturbances. This paper presents an online, output-feedback, critic-only, model-based…

Systems and Control · Electrical Eng. & Systems 2023-04-25 Tochukwu Elijah Ogri , Zachary I. Bell , Rushikesh Kamalapurkar

Background: Pharmacokinetic evaluation is one of the key processes in drug discovery and development. However, current absorption, distribution, metabolism, excretion prediction models still have limited accuracy. Aim: This study aims to…

Machine Learning · Computer Science 2018-12-27 Zhuyifan Ye , Yilong Yang , Xiaoshan Li , Dongsheng Cao , Defang Ouyang