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The melting of a homopolymer double-stranded (ds) deoxyribonucleic acid (DNA) in the dilute limit is studied numerically in the presence of an attractive and impenetrable surface on a simple cubic lattice. The two strands of the DNA are…

Soft Condensed Matter · Physics 2023-06-09 Debjyoti Majumdar

Optically accessible, scalable planar nanofluidic channels are attractive for studying transport and localization under confinement. Two dimensional (2D) materials provide large area, atomically flat interfaces for generating such…

Surface confined dehalogenation reactions are versatile bottom-up approaches for the synthesis of carbon-based nanostructures with predefined chemical properties. However, for devices generally requiring low conductivity substrates,…

A summary of photo- and electrochemical surface modifications applied on single-crystalline chemical vapor deposition (CVD) diamond films is given. The covalently bonded formation of amine- and phenyl-linker molecule layers are…

Applied Physics · Physics 2020-05-11 Christoph E. Nebel , Bohuslav Rezek , Dongchan Shin , Hiroshi Uetsuka , Nianjun Yang

When mixed together, DNA and polyaminoamide (PAMAM) dendrimers form fibers that condense into a compact structure. We use optical tweezers to pull condensed fibers and investigate the decondensation transition by measuring force-extension…

Soft Condensed Matter · Physics 2009-11-11 F. Ritort , S. Mihardja , S. B. Smith , C. Bustamante

High-resolution spectroscopy allows one to probe weak interactions and to detect subtle phenomena. While such measurements are routinely performed on atoms and molecules in the gas phase, spectroscopy of adsorbed species on surfaces is…

The development of novel strategies for self-assembly in the field of nanotechnology has witnessed remarkable progress in recent years. Here, we present a DNA-driven programmable self-assembly to fabricate the targeted nanophotonic…

DNA molecules spin-coated on amorphous quartz substrates are shown to form stable films. Electron density profiles (EDPs) along the film depth show that film prepared from aqueous solution of DNA exhibits layering of the molecules in three…

Solution-processed few-layers graphene flakes, dispensed to rotating and sliding contacts via liquid dispersions, are gaining increasing attention as friction modifiers to achieve low friction and wear at technologically-relevant…

Mesoscale and Nanoscale Physics · Physics 2023-07-28 Renato Buzio , Andrea Gerbi , Cristina Bernini , Luca Repetto , Andrea Silva , Andrea Vanossi

We propose that semiflexible polymers in poor solvent collapse in two stages. The first stage is the well known formation of a dense toroidal aggregate. However, if the solvent is sufficiently poor, the condensate will undergo a second…

Soft Condensed Matter · Physics 2009-11-10 Igor M. Kulic , Denis Andrienko , Markus Deserno

Vanadium silicide (V$_3$Si) is a promising superconductor for integration with silicon-based electronics, however the interfacial growth kinetics have a strong influence on the resulting superconducting properties and are not yet fully…

Under supercoiling constraints, naked DNA, such as a large part of bacterial DNA, folds into braided structures called plectonemes. The double-helix can also undergo local structural transitions, leading to the formation of denaturation…

Biological Physics · Physics 2017-08-08 Thibaut Lepage , Ivan Junier

A distinctive feature of layered conductors is the presence of low-energy electronic collective modes of the conduction electrons. This affects the dynamic screening properties of the Coulomb interaction in a layered material. We study the…

Superconductivity · Physics 2009-11-10 A. Bill , H. Morawitz , V. Z. Kresin

It is shown that the Josephson subsystem of the Lawrence-Doniach model of layered superconductors in the London approximation can be presented as a system with variable number of classical Coulomb particles. This allows us to consider the…

Superconductivity · Physics 2007-11-08 A. N. Artemov

We have developed an efficient numerical method to investigate light scattering from plasmonic nanospheres on a substrate covered by a shell, based on the half-space Greens function approach. We use this method to study optical scattering…

Mesoscale and Nanoscale Physics · Physics 2017-10-17 Huai-Yi Xie , Minfeng Chen , Yia-Chung Chang , Rakesh Singh Moirangthem

The assembly of nanometer-sized building blocks into complex morphologies is not only of fundamental interest but also plays a key role in material science and nanotechnology. We show that the shape of self-assembled superstructures formed…

Soft Condensed Matter · Physics 2020-05-08 Baeckkyoung Sung , Rik Wensink , Eric Grelet

The deposition of nanometer-scale particles is of significant interest in various industrial processes. While these particles offer several advantages, their deposition can have detrimental effects, such as reducing the heat transfer…

Fluid Dynamics · Physics 2025-02-19 A. K. Nayak , A. Singh , M. Mesgarpour , M. S. Shadloo

Genetic engineering of cells has a range of applications in treating incurable diseases. Plasmid DNA is a popular choice of nucleic acid for cell engineering due to its low cost and stability. However, plasmid DNA must survive the…

Biological Physics · Physics 2025-10-06 Leyla Akh , Apresio K. Fajrial , Benjamin Seelbinder , Xin Xu , Wei Tan , Jill Slansky , Corey P. Neu , Xiaoyun Ding

The Histone-like Nucleoid Structuring protein (H-NS) is a nucleoid-associated protein, which is involved in both gene regulation and DNA compaction. Although it is a key player in genome organization by forming bridges between DNA duplexes,…

Biological Physics · Physics 2014-09-23 Marc Joyeux

In spite of significant advances in replication technologies, methods to produce well-defined three dimensional structures are still at its infancy. Such a limitation would be evident if we were to produce a large array of simple and,…