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Small random perturbations may have a dramatic impact on the long time evolution of dynamical systems, and large deviation theory is often the right theoretical framework to understand these effects. At the core of the theory lies the…

Numerical Analysis · Mathematics 2017-10-11 Tobias Grafke , Tobias Schaefer , Eric Vanden-Eijnden

Being able to reliably track perturbations across bounces and turnarounds in cyclic and bouncing cosmology lies at the heart of being able to compare the predictions of these models with the Cosmic Microwave Background observations. This…

General Relativity and Quantum Cosmology · Physics 2016-03-23 Tirthabir Biswas , Riley Mayes , Colleen Lattyak

Self-propelled microorganisms, such as unicellular algae or bacteria, swim along their director relative to the fluid velocity. Under a steady shear flow the director rotates in close orbit, a periodic structure that is preserved under an…

Soft Condensed Matter · Physics 2015-06-11 Francisca Guzman-Lastra , Rodrigo Soto

Synchronization phenomena are pervasive in biology. In neuronal networks, the mechanisms of synchronization have been extensively studied from both physiological and computational viewpoints. The functional role of synchronization has also…

Neurons and Cognition · Quantitative Biology 2009-06-18 Nicolas Tabareau , Jean-Jacques Slotine , Quang-Cuong Pham

The rheological properties of brushes of different length on the surface of human epithelial cancerous cells are studied here by means of coarse grained numerical simulations, where the surface of the cell is subjected to an external…

Soft Condensed Matter · Physics 2015-09-25 J. D. Hernández Velázquez , S. Mejía-Rosales , A. Gama Goicochea

Vibrations of the Jeffcott rotor are modelled by a three degree of freedom system including coupling between lateral and torsional modes. The crack in a rotating shaft of the rotor is introduced via time dependent stiffness with off…

Chaotic Dynamics · Physics 2015-05-13 Grzegorz Litak , Jerzy T. Sawicki

We review the mathematical formalism underlying the modelling of stochasticity in biological systems. Beginning with a description of the system in terms of its basic constituents, we derive the mesoscopic equations governing the dynamics…

Populations and Evolution · Quantitative Biology 2012-11-05 Alan J. McKane , Tommaso Biancalani , Tim Rogers

The tracheal flow field shapes particle transport into the lower airways and thus influences both the spread of inhaled pathogens and the effectiveness of aerosol-based therapies. Identifying how different inhalation routes modify the flow…

Fluid Dynamics · Physics 2026-02-18 Benedikt H. Johanning-Meiners , Luca Mayolle , Dominik Krug , Michael Klaas

The effect of radial vibrations on the properties of one or two disks confined to a circular trap in contact with a thermal reservoir are investigated. The vibrational amplitudes and energies are assumed to be quantized, with the motions…

Statistical Mechanics · Physics 2019-08-14 James H. Taylor

Studies of flow through the human airway have shown that inhalation time (IT) and secondary flow structures can play important roles in particle deposition. However, the effects of varying IT in conjunction with respiratory rate (RR) on…

Fluid Dynamics · Physics 2021-01-26 Manikantam G. Gaddam , Arvind Santhanakrishnan

We use a combination of analytical theory, numerical simulation, and data analysis to study the propagation of acoustic waves along coronal loops. We show that the intensity perturbation of a wave depends on a number of factors, including…

Astrophysics · Physics 2009-11-10 J. A. Klimchuk , S. E. M. Tanner , I. De Moortel

We investigate the motion of a hard cylinder rolling down a soft inclined plane. The cylinder is subjected to a viscous drag force and stochastic fluctuations due to the surrounding medium. In a wide range of parameters we observe…

Materials Science · Physics 2009-11-10 Thorsten Poeschel , Nikolai V. Brilliantov , Alexei Zaikin

Before septation processes shape its four chambers, the embryonic heart is a straight tube that spontaneously bends and twists breaking the left-right symmetry. In particular, the heart tube is subjected to a cell remodelling inducing…

Soft Condensed Matter · Physics 2020-10-05 Giulia Bevilacqua , Pasquale Ciarletta , Alfio Quarteroni

We explore the chaotic dynamics and complexity of a neuro-system with respect to variable synaptic weights in both noise free and noisy conditions. The chaotic dynamics of the system is investigated by bifurcation analysis and 0-1 test. A…

Chaotic Dynamics · Physics 2021-03-17 Sanjay K. Palit , Sayan Mukherjee

The short-term memory effects recently observed in vibration-induced compaction of granular materials are studied. It is shown that they can be explained by means of quite plausible hypothesis about the mesoscopic description of the…

Statistical Mechanics · Physics 2009-11-07 J. Javier Brey , A. Prados

Sleep is commonly studied through neurochemical, evolutionary, and behavioral frameworks, typically emphasizing circadian rhythms and energy conservation. However, these approaches do not fully explain a deeper biophysical question: why…

Other Quantitative Biology · Quantitative Biology 2025-06-18 Brathikan Vijayamohan Mankayarkarasi

Models of active nematics in biological systems normally require complexity arising from the hydrodynamics involved at the microscopic level as well as the viscoelastic nature of the system. Here we show that a minimal, space-independent,…

Soft Condensed Matter · Physics 2022-06-27 Emmanuel L. C. VI M. Plan , Huong Le Thi , Julia M. Yeomans , Amin Doostmohammadi

Self-oscillations underlie many natural phenomena such as heartbeat, ocean waves, and the pulsation of variable stars. From pendulum clocks to the behavior of animal groups, self-oscillation is one of the keys to the understanding of…

We investigate a problem of the necessary and sufficient conditions for appearance of the 1/f fluctuations in the simple systems affected by the external random perturbations, i.e. the power spectral density of the flux of particles moving…

adap-org · Physics 2007-05-23 B. Kaulakys , T. Meskauskas

The interplay of nuclear and electronic dynamics characterizes the multi-dimensional electronic spectra of various molecular and solid-state systems. Theoretically, the observable effect of such interplay can be accounted for by response…

Quantum Physics · Physics 2023-02-07 Filippo Troiani
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