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Graphene layers are stable, hard, and relatively inert. We study how tensile stress affects $\sigma$ and $\pi$ bonds and the resulting change in the chemical activity. Stress affects more strongly $\pi$ bonds that can become chemically…

Materials Science · Physics 2015-05-13 P. L. de andres , J. A. Verges

We consider the fracture of a free-standing two-dimensional (2D) elastic-brittle network to be used as protective coating subject to constant tensile stress applied on its rim. Using a Molecular Dynamics simulation with Langevin thermostat,…

Soft Condensed Matter · Physics 2015-06-03 J. Paturej , H. Popova , A. Milchev , T. A. Vilgis

Biological adhesion is a critical mechanical function of complex organisms operating at multiple scales. At the cellular scale, cell-cell adhesion is remarkably tunable to enable both cohesion and malleability during development,…

Soft Condensed Matter · Physics 2022-03-07 Dimitri Kaurin , Pradeep K. Bal , Marino Arroyo

Bifurcation analysis of dynamic pull-in for a lumped mass model is presented. The restoring force of the spring is derived based on the nonlinear constitutive stress-strain law and the driving force of the mass attached to the spring is…

Dynamical Systems · Mathematics 2018-08-07 P. Skrzypacz , S. Kadyrov , D. Nurakhmetov , D. Wei

Pattern formation and the mechanics of a mixture of actin filaments and myosin motors that is confined by a rigid membrane is investigated. By using a coarse-grained molecular dynamics model, we demonstrate that the competition between the…

Soft Condensed Matter · Physics 2023-04-12 Mitsusuke Tarama , Tatsuo Shibata

One of the most intriguing results of single molecule experiments on proteins and nucleic acids is the discovery of functional heterogeneity: the observation that complex cellular machines exhibit multiple, biologically active…

Biomolecules · Quantitative Biology 2022-10-12 Michael Hinczewski , Changbong Hyeon , D. Thirumalai

Stacking mismatches in hexagonal boron nitride (h-BN) nanostructures affect their photonic, mechanical, and thermal properties. To access information about the stacked configuration of layered ensembles, highly sophisticated techniques like…

Materials Science · Physics 2021-03-03 Luigi Cigarini , Michal Novotný , František Karlický

Forced desorption of a semiflexible polymer chain on a solid substrate is theoretically investigated. The pulling force versus displacement is studied for different adsorption energy and persistence length P. It is found that the…

Statistical Mechanics · Physics 2015-06-19 Pui-Man Lam , Yi Zhen

The effect of flexibility on the hydrodynamic loads and on the flow structures generated on a rectangular foil when oscillating in pitch has been studied. Hydrodynamic loads were measured with a 6-axes balance, and the flow structures were…

Fluid Dynamics · Physics 2013-10-15 R. Fernandez-Prats , F. J. Huera-Huarte

Describing the behaviour of strongly interacting particles in the presence of disorder is among the most challenging problems in quantum many-body physics. The controlled setting of cold atom experiments provides a new avenue to address…

We have developed a new extended replica exchange method to study thermodynamics of a system in the presence of external force. Our idea is based on the exchange between different force replicas to accelerate the equilibrium process. We…

Biomolecules · Quantitative Biology 2009-11-13 Maksim Kouza , Chin-Kun Hu , Mai Suan Li

Graphene, one of the strongest materials ever discovered, triggered the exploration of many 2D materials in the last decade. However, the successful synthesis of a stable nanomaterial requires a rudimentary understanding of the relationship…

Materials Science · Physics 2017-04-05 Obaidur Rahaman , Bohayra Mortazavi , Arezoo Dianat , Gianaurelio Cuniberti , Timon Rabczuk

We investigate diffusion-limited reactions between a diffusing particle and a target site on a semiflexible polymer, a key factor determining the kinetics of DNA-protein binding and polymerization of cytoskeletal filaments. Our theory…

Soft Condensed Matter · Physics 2010-12-08 Yann von Hansen , Roland R. Netz , Michael Hinczewski

We study the crossover from the one-dimensional to the two-dimensional Hubbard model in the photoemission spectra of weakly coupled chains. The chains with on-site repulsion are treated using the spin-charge factorized wave function, that…

Strongly Correlated Electrons · Physics 2011-07-19 P. Ribeiro , P. D. Sacramento , K. Penc

Most single-molecule studies derive the kinetic rates of native, intermediate, and unfolded states from equilibrium hopping experiments. Here, we apply Kramers kinetic diffusive model to derive the force-dependent kinetic rates of…

Soft Condensed Matter · Physics 2022-04-13 Marc Rico-Pasto , Anna Alemany , Felix Ritort

Photophoretic forces - which are of thermal origin - have defined an alternative route of optical trapping of absorbing microparticles in air. Here, we show that a single multi-mode fiber facilitates significantly more robust optical traps…

Optics · Physics 2023-01-11 Souvik Sil , Anita Pahi , Aman Anil Punse , Ayan Banerjee

The vibrational response of polymer networks under load provides a sensitive probe of molecular deformation and a route to non-destructive diagnostics. Here we show that machine-learned force fields reproduce these spectroscopic…

Chemical Physics · Physics 2025-09-25 Julian Konrad , Janina Mittelhaus , David M. Wilkins , Bodo Fiedler , Robert Meißner

The non-equilibrium structural and dynamical properties of a flexible polymer tethered to a reflecting wall and subject to oscillatory linear flow are studied by numerical simulations. Polymer is confined in two dimensions and is modeled as…

Soft Condensed Matter · Physics 2024-07-30 A. Lamura

The dynamics of a stiff filament (made by connecting beads) embedded in size-polydisperse hard sphere fluid is investigated by means of molecular dynamics simulations with focus on how the degree of size-polydispersity, characterized by…

Soft Condensed Matter · Physics 2025-03-06 Thokchom Premkumar Meitei , Lenin S. Shagolsem

A system of two static quarks, at fixed distances r, and two light quarks is studied on an anisotropic lattice. Excitations by operators emphasizing quark or gluon degrees of freedom are examined. The maximum entropy method is applied in…

High Energy Physics - Lattice · Physics 2007-05-23 LHPC , H. Rudolf Fiebig