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The role of T-cells within the immune system is to confirm and assess anomalous situations and then either respond to or tolerate the source of the effect. To illustrate how these mechanisms can be harnessed to solve real-world problems, we…

Artificial Intelligence · Computer Science 2010-07-05 Jungwon Kim , William Wilson , Uwe Aickelin , Julie McLeod

The concept of network immunity, i.e., the robustness of the network connectivity after a random deletion of edges or vertices, has been investigated in biological or communication networks. We apply this concept to a self-assembling,…

Soft Condensed Matter · Physics 2007-05-23 Guy Hed , S. A. Safran

An interesting inference drawn by some Covid-19 epidemiological models is that there exists a proportion of the population who are not susceptible to infection -- even at the start of the current pandemic. This paper introduces a model of…

Quantitative Methods · Quantitative Biology 2020-09-18 Thomas Parr , Anjali Bhat , Peter Zeidman , Aimee Goel , Alexander J. Billig , Rosalyn Moran , Karl J. Friston

Viral infections trigger complex immune responses with heterogeneous outcomes shaped by nonlinear feedbacks. An ordinary differential equation model is developed to investigate immune response dynamics during viral infection, incorporating…

Quantitative Methods · Quantitative Biology 2025-10-08 Xiaoxin Wang , Kai Kang , Leyi Zhang , Changjing Zhuge

T-cell receptors (TCR) are key proteins of the adaptive immune system, generated randomly in each individual, whose diversity underlies our ability to recognize infections and malignancies. Modeling the distribution of TCR sequences is of…

Quantitative Methods · Quantitative Biology 2020-07-01 Giulio Isacchini , Zachary Sethna , Yuval Elhanati , Armita Nourmohammad , Aleksandra M. Walczak , Thierry Mora

Generative mechanisms which lead to empirically observed structure of networked systems from diverse fields like biology, technology and social sciences form a very important part of study of complex networks. The structure of many…

Physics and Society · Physics 2015-12-03 Snehal M. Shekatkar , G. Ambika

When a fraction of a population becomes immune to an infectious disease, the population-wide infection risk decreases nonlinearly due to collective protection, known as herd immunity. Some studies based on mean-field models suggest that…

Physics and Society · Physics 2025-09-03 Takayuki Hiraoka , Zahra Ghadiri , Abbas K. Rizi , Mikko Kivelä , Jari Saramäki

Dendritic cells are antigen presenting cells that provide a vital link between the innate and adaptive immune system. Research into this family of cells has revealed that they perform the role of coordinating T-cell based immune responses,…

Artificial Intelligence · Computer Science 2010-07-05 Julie Greensmith , Uwe Aickelin , Steve Cayzer

The emerging field of immunometabolism has underscored the central role of metabolic pathways in orchestrating immune cell function. Far from being passive background processes, metabolic activities actively regulate key immune responses.…

Cell Behavior · Quantitative Biology 2025-06-04 Sunayana Malla , Nabia Shahreen , Rajib Saha

Multiplexed immunofluorescence provides an unprecedented opportunity for studying specific cell-to-cell and cell microenvironment interactions. We employ graph neural networks to combine features obtained from tissue morphology with…

We analyse a minimal model for the primary response in the adaptive immune system comprising three different players: antigens, T and B cells. We assume B-T interactions to be diluted and sampled locally from heterogeneous degree…

Cell Behavior · Quantitative Biology 2015-09-30 Silvia Bartolucci , Alessia Annibale

The immune system recognizes a myriad of invading pathogens and their toxic products. It does so with a finite repertoire of antibodies and T cell receptors. We here describe theories that quantify the immune system dynamics. We describe…

Populations and Evolution · Quantitative Biology 2010-10-05 Michael W. Deem , Pooya Hejazi

In this paper, we study two-dimensional, three-dimensional monotonic and nonmonotonic immune responses in viral infection systems. Our results show that the viral infection systems with monotonic immune response has no bistability appear.…

Populations and Evolution · Quantitative Biology 2019-08-05 Shaoli Wang , Huixia Li , Fei Xu

Most centralities proposed for identifying influential spreaders on social networks to either spread a message or to stop an epidemic require the full topological information of the network on which spreading occurs. In practice, however,…

Physics and Society · Physics 2017-12-13 Byungjoon Min , Fredrik Liljeros , Hernán A. Makse

Inflammatory bowel diseases (IBD) are complex diseases in which the gut microbiota is attacked by the immune system of genetically predisposed subjects when they are exposed to yet unclear environmental factors. The complexity of this class…

Quantitative Methods · Quantitative Biology 2022-08-17 Mirko Hu , Guido Caldarelli , Tommaso Gili

In many real-world complex systems, individuals have many kind of interactions among them, suggesting that it is necessary to consider a layered structure framework to model systems such as social interactions. This structure can be…

Physics and Society · Physics 2015-02-06 C. Buono , L. A. Braunstein

Immunizing a subset of nodes in a network - enabling them to identify and withstand the spread of harmful content - is one of the most effective ways to counter the spread of malicious content. It has applications in network security,…

Social and Information Networks · Computer Science 2019-12-30 Muhammad Ahmad , Sarwan Ali , Juvaria Tariq , Imdadullah Khan , Mudassir Shabbir , Arif Zaman

The cellular adaptive immune response plays a key role in resolving influenza infection. Experiments where individuals are successively infected with different strains within a short timeframe provide insight into the underlying viral…

Populations and Evolution · Quantitative Biology 2016-11-24 Ada W. C. Yan , Pengxing Cao , Jane M. Heffernan , Jodie McVernon , Kylie M. Quinn , Nicole L. La Gruta , Karen L. Laurie , James M. McCaw

The first mitigation response to the Covid-19 pandemic was to limit person-to-person interaction as much as possible. This was implemented by the temporary closing of many workplaces and people were required to follow social distancing.…

Physics and Society · Physics 2020-06-17 Parul Maheshwari , Réka Albert

Mutualism is a biological interaction mutually beneficial for both species involved, such as the interaction between plants and their pollinators. Real mutualistic communities can be understood as weighted bipartite networks and they…

Populations and Evolution · Quantitative Biology 2014-03-24 Manuel Jiménez-Martín , Juan Manuel Pastor , Juan Carlos Losada , Javier Galeano