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We calculate a current and its fluctuation in a two-state stochastic system under a periodic perturbation. The system could be interpreted as a channel on a cell surface or a single Michaelis-Menten catalyzing enzyme. It has been shown that…

Statistical Mechanics · Physics 2010-06-18 Jun Ohkubo

We study a classical two-state stochastic system in a sea of substrates and products (absorbing states), which can be interpreted as a single Michaelis-Menten catalyzing enzyme or as a channel on a cell surface. We introduce a novel general…

Quantitative Methods · Quantitative Biology 2009-11-13 N. A. Sinitsyn , Ilya Nemenman

We study nonadiabatic effects of geometric pumping. With arbitrary choices of periodic control parameters, we go beyond the adiabatic approximation to obtain the exact pumping current. We find that a geometrical interpretation for the…

Statistical Mechanics · Physics 2020-04-17 Kazutaka Takahashi , Keisuke Fujii , Yuki Hino , Hisao Hayakawa

Adiabatic pumping is characterized by a geometric contribution to the pumped charge, which can be non-zero even in the absence of a bias. However, as the driving speed is increased, non-adiabatic excitations gradually reduce the pumped…

Mesoscale and Nanoscale Physics · Physics 2020-04-15 Ken Funo , Neill Lambert , Franco Nori , Christian Flindt

The control of chemical dynamics requires understanding the effect of time-dependent transition rates between states of chemo-mechanical molecular configurations. Pumping refers to generating a net current, e.g. per period in the…

Statistical Mechanics · Physics 2015-05-18 C. Maes , K. Netocny , S. R. Thomas

Using a tight-binding model, we study one-parameter charge pumping in a one-dimensional system of non-interacting electrons. An oscillating potential is applied at one site while a static potential is applied in a different region. Using…

Mesoscale and Nanoscale Physics · Physics 2009-11-13 Amit Agarwal , Diptiman Sen

A stochastic pump is a Markov model of a mesoscopic system evolving under the control of externally varied parameters. In the model, the system makes random transitions among a network of states. For such models, a "no-pumping theorem" has…

Statistical Mechanics · Physics 2012-03-16 Dibyendu Mandal , Christopher Jarzynski

We clarify the role of non-adiabatic effects in a quantum pumping for a spin-boson system. When we sinusoidally control the temperatures of two reservoirs with \pi/2 phase difference, we find that the pumping current strongly depends on the…

Statistical Mechanics · Physics 2014-11-24 Kota L. Watanabe , Hisao Hayakawa

We analyze the operation of a molecular machine driven by the non-adiabatic variation of external parameters. We derive a formula for the integrated flow from one configuration to another, obtain a "no-pumping theorem" for cyclic processes…

Statistical Mechanics · Physics 2008-10-08 Saar Rahav , Jordan Horowitz , Christopher Jarzynski

The success of Berry phases in quantum mechanics stimulated the study of similar phenomena in other areas of physics, including the theory of living cell locomotion and motion of patterns in nonlinear media. More recently, geometric phases…

Statistical Mechanics · Physics 2015-05-13 N. A. Sinitsyn

A periodically modulated N-state model whose dynamics is governed by a time-convoluted generalized master equation is theoretically analyzed. It is shown that this non-Markovian master equation can be converted to a Markovian master…

Statistical Mechanics · Physics 2021-06-30 Ville Matias Mikael Paasonen , Hisao Hayakawa

Pumping of charge in phase-coherent mesoscopic systems due to the out-of-phase modulation of two parameters has recently found considerable interest. We investigate the effect of inelastic processes on the adiabatically pumped current…

Mesoscale and Nanoscale Physics · Physics 2009-11-07 M. Moskalets , M. Buttiker

We present the stochastic thermodynamics analysis of an open quantum system weakly coupled to multiple reservoirs and driven by a rapidly oscillating external field. The analysis is built on a modified stochastic master equation in the…

Statistical Mechanics · Physics 2015-05-12 Gregory Bulnes Cuetara , Andreas Engel , Massimiliano Esposito

Stochastic pumps are models of artificial molecular machines which are driven by periodic time variation of parameters, such as site and barrier energies. The no-pumping theorem states that no directed motion is generated by variation of…

Statistical Mechanics · Physics 2014-07-29 Shahaf Asban , Saar Rahav

We show that current fluctuations in a stochastic pump can be robustly mapped to fluctuations in a corresponding time-independent nonequilibrium steady state. We thus refine a recently proposed mapping so that it ensures equivalence of not…

Statistical Mechanics · Physics 2017-03-22 Grant M. Rotskoff

We study a one-dimensional quantum pump composed of two oscillating delta-functional barriers. The linear and non-linear regimes are considered. The harmonic signal applied to any or both barriers causes the stationary current. The…

Mesoscale and Nanoscale Physics · Physics 2009-11-11 M. M. Mahmoodian , L. S. Braginskii , M. V. Entin

We use the equations of motion of non-interacting electrons in a one-dimensional system to numerically study different aspects of charge pumping. We study the effects of the pumping frequency, amplitude, band filling and finite bias on the…

Mesoscale and Nanoscale Physics · Physics 2015-06-25 Amit Agarwal , Diptiman Sen

The noise properties of pump currents through an open double quantum dot setup with non-adiabatic ac driving are investigated. Driving frequencies close to the internal resonances of the double dot-system mark the optimal working points at…

Mesoscale and Nanoscale Physics · Physics 2007-05-23 Michael Strass , Peter Hänggi , Sigmund Kohler

We put forward nonadiabatic charge pumping as a method for accessing the different charge relaxation rates as well as the relaxation rates of excited orbital states in double-quantum-dot setups, based on extremely size-limited quantum dots…

Mesoscale and Nanoscale Physics · Physics 2016-06-08 Roman-Pascal Riwar , Benoît Roche , Xavier Jehl , Janine Splettstoesser

We study directed transport in periodically forced scattering systems in the regime of fast and strong driving where the dynamics is mixed to chaotic and adiabatic approximations do not apply. The model employed is a square potential well…

Mesoscale and Nanoscale Physics · Physics 2012-10-04 A. Castañeda , T. Dittrich , G. Sinuco
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