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Sirenia are marine mammals that colonized the European shores up to 2.7 Ma. Their biodiversity evolution follows the climate evolution of the Cenozoic. However, several climate events, as well as the global climate trend of this Era are…

Populations and Evolution · Quantitative Biology 2014-09-29 Francisco Cabral , Mario Cachao , Rui Jorge Agostinho , Goncalo Prista

Evolution of genetic code is studied as the change in the choice of enzymes that are used to synthesize amino acids from the genetic information of nucleic acids. We propose the following theory: the differentiation of physiological states…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 H. Takagi , K. Kaneko , T. Yomo

We analyse the evolution of cosmological perturbations which leads to the formation of large voids in the distribution of galaxies. We assume that perturbations are spherical and all components of the Universe - radiation, matter and dark…

Cosmology and Nongalactic Astrophysics · Physics 2020-08-04 Maksym Tsizh , Bohdan Novosyadlyj

This paper focuses on the maximum speed at which biological evolution can occur. I derive inequalities that limit the rate of evolutionary processes driven by natural selection, mutations, or genetic drift. These \emph{rate limits} link the…

Populations and Evolution · Quantitative Biology 2024-06-17 Luis Pedro García-Pintos

Systems evolving according to the standard concept of biological or technological evolution are often described by catalytic evolution equations. We study the structure of these equations and find a deep relationship to classical…

Physics and Society · Physics 2007-05-23 Rudolf Hanel , Stuart A. Kauffman , Stefan Thurner

The role of the selection pressure and mutation amplitude on the behavior of a single-species population evolving on a two-dimensional lattice, in a periodically changing environment, is studied both analytically and numerically. The…

Populations and Evolution · Quantitative Biology 2009-11-13 Ioana Bena , Michel Droz , Janusz Szwabinski , Andrzej Pekalski

The acceleration of the cosmic expansion revealed by supernova observations indicates that the present universe is dominated by repulsive dark energy. It is natural that the coupling between the dark energy and the attractive gravity has to…

Cosmology and Nongalactic Astrophysics · Physics 2014-10-07 Ti-Pei Li , Mei Wu

This paper discusses the benefits of describing the world as information, especially in the study of the evolution of life and cognition. Traditional studies encounter problems because it is difficult to describe life and cognition in terms…

Information Theory · Computer Science 2013-04-05 Carlos Gershenson

The evolution of various competing cell types in tissues, and the resulting persistent tissue population, is studied numerically and analytically in a particle-based model of active tissues. Mutations change the properties of cells in…

Populations and Evolution · Quantitative Biology 2024-06-03 Tobias Büscher , Nirmalendu Ganai , Gerhard Gompper , Jens Elgeti

Evolution and learning are two of the fundamental mechanisms by which life adapts in order to survive and to transcend limitations. These biological phenomena inspired successful computational methods such as evolutionary algorithms and…

Neural and Evolutionary Computing · Computer Science 2019-05-10 Jan Schuchardt , Vladimir Golkov , Daniel Cremers

Each scheme of state reconstruction comes down to parametrize the state of a quantum system by expectation values or probabilities directly measurable in an experiment. It is argued that the time evolution of these quantities provides an…

Quantum Physics · Physics 2014-11-18 Stefan Weigert

Natural selection successfully explains how organisms accumulate adaptive change despite that traits acquired over a lifetime are eliminated at the end of each generation. However, in some domains that exhibit cumulative, adaptive change --…

Populations and Evolution · Quantitative Biology 2024-10-03 Liane Gabora , Mike Steel

The genetic code is profoundly shaped by an origin in ancient RNA-mediated interactions, needing an extended development to reach the Standard Genetic Code (SGC). That development can serially use RNA specificities, a ribonucleopeptide…

Populations and Evolution · Quantitative Biology 2024-06-13 Michael Yarus

We describe the simulation method of modelling the population evolution using Monte Carlo based on the Penna model. Individuals in the populations are represented by their diploid genomes. Genes expressed after the minimum reproduction age…

Genomics · Quantitative Biology 2009-01-13 Agnieszka Laszkiewicz , Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

In higher organisms, all cells share the same genome, but every cell expresses only a limited and specific set of genes that defines the cell type. During cell division, not only the genome, but also the cell type is inherited by the…

The concept of evolutionary development of structures constituted a \emph{real} revolution in biology: it was possible to understand how the very complex structures of life can arise in an out-of-equilibrium system. The investigation of…

Populations and Evolution · Quantitative Biology 2009-08-27 Franco Bagnoli

The parallel mutation-selection evolutionary dynamics, in which mutation and replication are independent events, is solved exactly in the case that the Malthusian fitnesses associated to the genomes are described by the Random Energy Model…

Biological Physics · Physics 2009-10-14 David B. Saakian , José F. Fontanari

The derivation of a new family of magnetic fields inducing exactly solvable spin evolutions is presented. The conditions for which these fields generate the evolution loops (dynamical processes for which any spin state evolves cyclically)…

Quantum Physics · Physics 2008-10-13 D. J. Fernandez C. , O. Rosas-Ortiz

Based on statistical analysis of the complete genome sequences, a remote relationship has been observed between the evolution of the genetic code and the three domain tree of life. The existence of such a remote relationship need to be…

Populations and Evolution · Quantitative Biology 2018-07-06 Dirson Jian Li

The quest to comprehend the origins of intelligence raises intriguing questions about the evolution of learning abilities in natural systems. Why do living organisms possess an inherent drive to acquire knowledge of the unknown? Is this…

Neurons and Cognition · Quantitative Biology 2023-10-05 Alex Ushveridze