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Related papers: A note on the phases of natural evolution

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If string theory controls physics at the string scale, the dynamics of the early universe before the GUT era will be governed by the low-energy string equations of motion. Studying these equations for FRW spacetimes, we find that depending…

High Energy Physics - Theory · Physics 2008-12-18 Dalia S. Goldwirth , Malcolm J. Perry

Which factors govern the evolution of mutation rates and emergence of species? Here, we address this question using a first principles model of life where population dynamics of asexual organisms is coupled to molecular properties and…

Populations and Evolution · Quantitative Biology 2009-11-13 Muyoung Heo , Louis Kang , Eugene I. Shakhnovich

Evolution is the fundamental physical process that gives rise to biological phenomena. Yet it is widely treated as a subset of population genetics, and thus its scope is artificially limited. As a result, the key issues of how rapidly…

Populations and Evolution · Quantitative Biology 2017-08-23 Nigel Goldenfeld , Carl Woese

Darwin's theory of evolution is considered to be one of the greatest scientific gems in modern science. It not only gives us a description of how living things evolve, but also shows how a population evolves through time and also, why only…

Machine Learning · Computer Science 2013-12-18 Arka Bhattacharya

It is well known that life on Earth alters its environment over evolutionary and geological timescales. An important open question is whether this is a result of evolutionary optimization or a universal feature of life. In the latter case,…

Adaptation and Self-Organizing Systems · Physics 2017-04-26 Cole Mathis , Tanmoy Bhattacharya , Sara Imari Walker

The original hypothesis about Three-stage origin of life (TOL) on the Earth is developed and discussed. The role of the temperature factor in life origin is considered. It is supposed, that three stages of abiogenesis (DNA world, RNA world…

Other Quantitative Biology · Quantitative Biology 2012-01-04 Victor P. Novikov

Evolution in changing environments is an important, but little studied aspect of the theory of evolution. The idea of adaptive walks in fitness landscapes has triggered a vast amount of research and has led to many important insights about…

Biological Physics · Physics 2007-05-23 Claus O. Wilke

A natural example of evolution can be described by a time-dependent two degrees-of-freedom Hamiltonian. We choose the case where initially the Hamiltonian derives from a general cubic potential, the linearised system has frequencies 1 and…

Dynamical Systems · Mathematics 2021-11-03 Ferdinand Verhulst

Biological evolution is a complex blend of ever changing structural stability, variability and emergence of new phenotypes, niches, ecosystems. We wish to argue that the evolution of life marks the end of a physics world view of law…

Other Quantitative Biology · Quantitative Biology 2012-01-11 Giuseppe Longo , Maël Montévil , Stuart Kauffman

In this work we propose a physical model of organismal evolution, where phenotype, organism life expectancy, is directly related to genotype i.e. the stability of its proteins which can be determined exactly in the model. Simulating the…

Populations and Evolution · Quantitative Biology 2007-05-23 Konstantin B. Zeldovich , Boris E. Shakhnovich , Eugene I. Shakhnovich

We study an active random walker model in which a particle's motion is determined by a self-generated field. The field encodes information about the particle's path history. This leads to either self-attractive or self-repelling behavior.…

Statistical Mechanics · Physics 2009-11-11 R. Grima

Traditionally evolution is seen as a process where from a pool of possible variations of a population (e.g. biological species or industrial goods) a few variations get selected which survive and proliferate, whereas the others vanish.…

Populations and Evolution · Quantitative Biology 2008-09-25 Rudolf Hanel , Stefan Thurner

The universe is found to have undergone several phases in which the gravitational constant had different behaviors. During some epochs the energy density of the universe remained constant and the universe remained static. In the radiation…

Astrophysics · Physics 2007-05-23 Arbab I. Arbab

Most living systems rely on double-stranded DNA (dsDNA) to store their genetic information and perpetuate themselves. This biological information has been considered the main target of evolution. However, here we show that symmetries and…

Biomolecules · Quantitative Biology 2025-05-01 Piero Fariselli , Cristian Taccioli , Luca Pagani , Amos Maritan

Darwin introduced the concept of the "living fossil" to describe species belonging to lineages that have experienced little evolutionary change, and suggested that species in more slowly evolving lineages are more prone to extinction (1).…

Genomics · Quantitative Biology 2013-02-12 Bianca Sclavi , John Herrick

Many mechanisms, functions and structures of life have been unraveled. However, the fundamental driving force that propelled chemical evolution and led to life has remained obscure. The 2nd law of thermodynamics, written as an equation of…

Populations and Evolution · Quantitative Biology 2009-10-15 Arto Annila , Erkki Annila

Nature's many varied complex systems (including galaxies, stars, planets, life, and society) are islands of order within the increasingly disordered universe. All organized systems are subject to physical, biological or cultural evolution,…

Popular Physics · Physics 2014-06-12 Eric J. Chaisson

The classification of life should be based upon the fundamental mechanism in the evolution of life. We found that the global relationships among species should be circular phylogeny, which is quite different from the common sense based upon…

Genomics · Quantitative Biology 2009-12-16 Dirson Jian Li , Shengli Zhang

In this communication, direction of evolutionary variability of parameters of genome size and structurally functional activity of plants in angiosperm taxa among life forms, are analysed. It is shown that, in the Cretaceous-Cenozoic era,…

Populations and Evolution · Quantitative Biology 2013-02-19 Serge Sheremetiev , Yuri Gamalei

We propose a minimal model to simulate long waiting times followed by evolutionary bursts on rugged landscapes. It combines point and inversions-like mutations as sources of genetic variation. The inversions are intended to simulate one of…

Populations and Evolution · Quantitative Biology 2021-05-13 Leonardo Trujillo , Paul Banse , Guillaume Beslon